Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1291 ATGCAAACTCATCATCACTCTTTCTCATCCTACATATCCTCTTGTGGGAGTAGTAGTACTACTAGTCCCTTCTTGGACAATCCCGAAGATGCCGATGTTGTGCTTCTTGATGACGAAGAAGCCTCCATTTCCCTTTCTCTTGGGCCTCCCGGCCAACATCACAACCCCAAGATCTCTACAACTTCACCACTACTACTGCAACATAACCCTAACTGTGATGATGACCAGAGTGGTGTAACCGTTGCTCTACACATTGGCCTTCCTTCCACAACAACAACAACTGCACCCAACACCACCACCACCATCAGCACCACAACAAGTAAAACTGATAGCCTTCAGGGTCAGTACTGGATCCCTTCCCCTGCACAAATCCTCATTGGTCCCACTCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAATCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCAGAATCATTAAGAGGAGCAAAGCCAGCATCTTCAATGCTGAGGCTACCATGCTATTGTTGCGCGGAAGGTTGCAAGAACAACATAGAGCACCCAAGATCAAGGCCTCTCAAGGATTTCAGGACACTGCAGACTCACTACAAGAGAAAGCATGGCGCCAAGCCCTTCGGCTGCCGCAAGTGCGGTAAGCCCTTCGCCGTCCGAGGAGATTGGAGGACGCACGAGAAGAATTGCGGCAAACTTTGGTTTTGCATATGTGGCTCCGATTTCAAGCACAAGAGATCCCTCAAGGACCATGTCCGCGCTTTCGGCGACGGCCATGCTCCTCATACTGTGGAGAGCTGTGACCAGTTCGTCGATGAAGAAGAAGATGATTATGAACTTGATGATGACGACGACCTAGACTTAGAAGATAATAACAACAATAATAGTAACGGCAATCAAGGTCTAAGAAATGATGGACTAAGCAATATTGAAGAGGGTGTGTTTGCTGCTGTTGTTGTCATGGTGTGTGTTAATGTTGTTATCACAATTGTTCACAGCAAGAGAGAAAGAGATAGAGAGAGAGAAAAGGAGTGCGAGAAGATGGAGACAAACAGTGAAATGAAAGGTAATAAGGTTCTTGCATTAAATGCTGGAAGTGGCAGTCTTATCTAA 1137 0.4635 MQTHHHSFSSYISSCGSSSTTSPFLDNPEDADVVLLDDEEASISLSLGPPGQHHNPKISTTSPLLLQHNPNCDDDQSGVTVALHIGLPSTTTTTAPNTTTTISTTTSKTDSLQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQFVDEEEDDYELDDDDDLDLEDNNNNNSNGNQGLRNDGLSNIEEGVFAAVVVMVCVNVVITIVHSKRERDREREKECEKMETNSEMKGNKVLALNAGSGSLI* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1291 378 MobiDBLite consensus disorder prediction 346 366 - -
Amo15g1291 378 PANTHER ZINC FINGER PROTEIN WIP6 2 303 - -
Amo15g1291 378 SUPERFAMILY beta-beta-alpha zinc fingers 199 236 IPR036236 -
Amo15g1291 378 MobiDBLite consensus disorder prediction 1 26 - -
Amo15g1291 378 MobiDBLite consensus disorder prediction 288 312 - -
Amo15g1291 378 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Amo15g1291 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Amo15g1291 378 PANTHER ZINC FINGER PROTEIN WIP2 2 303 IPR043584 GO:0003700|GO:0010468
Amo15g1291 378 Gene3D Classic Zinc Finger 173 263 - -
Amo15g1291 378 SUPERFAMILY beta-beta-alpha zinc fingers 124 153 IPR036236 -
Amo15g1291 378 MobiDBLite consensus disorder prediction 346 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1291 Amo-Chr15 101155039 101156910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1291 36 272 C2H2 Transcription Factor Family AT1G13290 71.545 3.31e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo15g1291 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1291 - - aprc:113870355 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4720 05 120830296 120831820 Amo15g1291 15 101155039 101156910 hybridization