Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1286 ATGGATGCAACAAGTTCCGTAGATGAAAGCACCACGTGCACAAATGACTCGCTTTCCATAACCCTAACCCCGGCGACACCCGCGTCGCCATTCACCGCCACATCGAAGAAGCTGTCACCGCCGCCACCAAACAGCTTATGTCGTGTCGGCAGCGGGGCCAGCACAATCGTGGATCCGGACGTCGGTGGCGGCGTCACCGAAGTGGAGTCACGAAAACTCCCTTCCTCCAAGTATAAAGGTGTGGTTCCCCAACCAAACGGACGTTGGGGTGCTCAGATTTATGAGAAGCATCAACGCGTTTGGTTGGGGACCTTTAACGAGGAGGACGAGGCCGCTAGAGCCTACGACATCGCAGCTCAACGGTTTCGTGGCAAGGATGCCGTCACCAACTTCAAGCCCCTCGGCAGTGTTGTGTCCAACAACACCGCGGTCGAGGACGAGGATTTCGAGAGCGAGTTTCTCAACTCGCATTCAAAATCCGAGATCGTGGACATGCTGAGAAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGGAGCCGCGGCCTCATAGGGCGGCGGCTCAACCGAGCTGCGGGTAACGGAGGTTCCGCGGGGATGATGTCTTCATCCGGCGCGTGTGGAGGGAAGGCGCGTGAGCAGTTGTTCGAGAAGGCCGTTACGCCAAGTGACGTGGGAAAACTGAATCGGTTAGTTATACCAAAACAACACGCGGAGAAACACTTTCCCTTACAAAACGGTTGCGGCGGAGCTGGCGGCGGAGTAGTTACGGCGGCGAAGGGCGTTTTGCTGAACTTCGAGGACGTCGGAGGAAAAGTGTGGCGGTTTCGTTACTCGTACTGGAACAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGATACGGTTTGTTTCCACCGGTCCACTGGACCGGACAGACAACTGTTTATAGACTGGAAGGCGAGAAGTGTTGGTAATGATGGGGTTGGGTTTTTTGGACCGGTTGGACCGGTTTTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGTGTTAACATTTTAAAGCTTCCTGGATCTGATGCCGGTGATAGCAATAACAATAATATTTTGAATATCAATAATGATAATAATGTTGCTGGTTCAATTGGTGGGTGCTTCAATGGGAAGAGAAAAGAGATGGAACTGTTTACGTTGGAGGGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1248 0.5296 MDATSSVDESTTCTNDSLSITLTPATPASPFTATSKKLSPPPPNSLCRVGSGASTIVDPDVGGGVTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGSVVSNNTAVEDEDFESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLIGRRLNRAAGNGGSAGMMSSSGACGGKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGCGGAGGGVVTAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDWKARSVGNDGVGFFGPVGPVLEPVQMVRLFGVNILKLPGSDAGDSNNNNILNINNDNNVAGSIGGCFNGKRKEMELFTLEGSKKPKIIGAL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1286 415 SUPERFAMILY DNA-binding pseudobarrel domain 215 325 IPR015300 -
Amo15g1286 415 Pfam B3 DNA binding domain 217 326 IPR003340 GO:0003677
Amo15g1286 415 Gene3D - 205 334 IPR015300 -
Amo15g1286 415 SUPERFAMILY DNA-binding domain 76 132 IPR016177 GO:0003677
Amo15g1286 415 CDD B3_DNA 216 314 IPR003340 GO:0003677
Amo15g1286 415 CDD AP2 76 131 IPR001471 GO:0003700|GO:0006355
Amo15g1286 415 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Amo15g1286 415 ProSiteProfiles AP2/ERF domain profile. 77 132 IPR001471 GO:0003700|GO:0006355
Amo15g1286 415 MobiDBLite consensus disorder prediction 1 45 - -
Amo15g1286 415 SMART B3_2 217 329 IPR003340 GO:0003677
Amo15g1286 415 MobiDBLite consensus disorder prediction 1 41 - -
Amo15g1286 415 Gene3D AP2/ERF domain 76 133 IPR036955 GO:0003700|GO:0006355
Amo15g1286 415 ProSiteProfiles B3 DNA-binding domain profile. 217 328 IPR003340 GO:0003677
Amo15g1286 415 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 415 - -
Amo15g1286 415 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 415 IPR044800 GO:0003700
Amo15g1286 415 SMART rav1_2 77 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1286 Amo-Chr15 101065495 101067743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1286 4 414 RAV Transcription Factor Family AT1G13260 54.893 7.42e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Amo15g1286 B3 1.2e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1286 K09287 - gmx:100801107 569.311