Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1275 ATGCCTTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCTGGGGAATGTAAGGATAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCATCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATAGGGGTATAGTAATTTATTTCATAAAAACTACTGAAAAATCAAATACAGAATGA 309 0.4175 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVLGNVRINQKTLGRAGSKCWLGKHPVVRGVVMNPVDHPHRGIVIYFIKTTEKSNTE* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1275 102 PANTHER RIBOSOMAL PROTEIN L2 1 87 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo15g1275 102 SMART Ribosomal_L2_C_2 1 94 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo15g1275 102 Pfam Ribosomal Proteins L2, C-terminal domain 1 47 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo15g1275 102 Pfam Ribosomal Proteins L2, C-terminal domain 48 87 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo15g1275 102 Gene3D - 1 62 IPR014722 -
Amo15g1275 102 ProSitePatterns Ribosomal protein L2 signature. 71 82 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo15g1275 102 PANTHER - 1 87 - -
Amo15g1275 102 SUPERFAMILY Translation proteins SH3-like domain 1 87 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1275 Amo-Chr15 100628380 100629391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1275 1 87 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 40.179 4.14e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1275 K02886 - cpap:5878356 157.532