Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1265 ATGAAAGCTACTGAAAGTTGGGTAACATCATTTTGTATGCTAGTTTGTGATCTATTGAGTGGTCTTTGTTACATGGGAATTAATGGTTTCAACTTCAAACTAAGCATGATCTGCTTGGAATTTAAGCGTTGGTTCAAAGGACCGGTATTGCTTGATATTCATGTAACTCAAGAGTGGCCTGGCTTACCAAAAGGGGTTAAATTTGATCCGTCAGATCAAGAGATAATCTGGCACTTGCTTGTAAAAGCTGGTGTAGGAAATTTAAAACCTCATCCTTTCATTGATGAGTTTATTACTACCCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAACATTTACCTGGTGTCAAGCAAGACGGAAGGGCCTCACATTTCTTCCACAGAGCAATAAAGGCTTATAATACCGGCACTCGAAAGCGTCGAAAAGTACATGGTCAGGATGACGTTCGTTGGCACAAGACTGGAAGGACTAAACTGATCACCCTGAACGGGGTTCAAAAGGGTTGCAAAAAAATCATGGTTTTATATACAAATGCGGTGAGAGGAGGAAAGTCAGAGAAAACTAATTGGGTTATGCACCAATATCACCTTGGGACAGAAGAAGATGAAAAGGAAGGAGAATATGTTATTTCTAAAGTTTTTTATAAAGAAGACCAGGATATACCTGAAGCCGCAGAAAGTAAGAATGCAACAGTTGCGAAAGTAGATCCAGTCACTCCCAAATCCACGACTCCTGAGCCTCCTCGTAATGAAAGGCAAGATTCAGATCTAGGCCTGGATCTAGACCTAGGGCAAGAAGCACTTGCTTTTCCTGAGATGGATTGCTTAGATGAAATTCAAGCTGACTGTGAAGAATCTGCGAAAGCTAATCCACCAGTACTGGAGACACAAGAAAATGAAGGGATGGACAACAAGGAAACTAATGCTTATGAAGCACAACCGTGGTGGGATAGTGATTCACAGAATCTATTAGATTCACAACAACTCGTTGAAGCATTAACTCTCTGCGAAGATATATTTCACAGCCAATCTTCCAACAAAGACGATGAAAATGATAAGAACCAAACCGGTCTATCTGTGTATGCTCATCTAGGACCAGAGCATCTGAAGAAGGATATTGAGGAGTGTCAAAAGCTTGCTCCTGCAGGACCAGAGCATCAGAAGGATATTGAAGACGGCCAAAATCTTGACATCGACCTTGCAAATATAGAGCGGGATACTCCTCCTGAGCATCGACTAAGTCAGCTGGAATTTGGTTCGCAGGACAGCTATACTTACTGGGGTTTTCAAGGCTTCTGGATGTGGACTCGAGAGAGAAAGATGCATTTAGATTTCTACTCTATTCAAGCAGCTATGGAATTATCAAAACTGAAAAATAGTAATGTTGGCTTTGTTCTACAGTACCAAGTAGTATCAGGATGTGAATTTTATCCAAACCCTCAGTTATACGATGGTGTGGGTTAA 1470 0.4102 MKATESWVTSFCMLVCDLLSGLCYMGINGFNFKLSMICLEFKRWFKGPVLLDIHVTQEWPGLPKGVKFDPSDQEIIWHLLVKAGVGNLKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGRASHFFHRAIKAYNTGTRKRRKVHGQDDVRWHKTGRTKLITLNGVQKGCKKIMVLYTNAVRGGKSEKTNWVMHQYHLGTEEDEKEGEYVISKVFYKEDQDIPEAAESKNATVAKVDPVTPKSTTPEPPRNERQDSDLGLDLDLGQEALAFPEMDCLDEIQADCEESAKANPPVLETQENEGMDNKETNAYEAQPWWDSDSQNLLDSQQLVEALTLCEDIFHSQSSNKDDENDKNQTGLSVYAHLGPEHLKKDIEECQKLAPAGPEHQKDIEDGQNLDIDLANIERDTPPEHRLSQLEFGSQDSYTYWGFQGFWMWTRERKMHLDFYSIQAAMELSKLKNSNVGFVLQYQVVSGCEFYPNPQLYDGVG* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1265 489 ProSiteProfiles NAC domain profile. 62 218 IPR003441 GO:0003677|GO:0006355
Amo15g1265 489 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 54 430 - -
Amo15g1265 489 Gene3D NAC domain 71 223 IPR036093 GO:0003677|GO:0006355
Amo15g1265 489 Pfam No apical meristem (NAM) protein 63 199 IPR003441 GO:0003677|GO:0006355
Amo15g1265 489 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 54 430 IPR044799 GO:0003700
Amo15g1265 489 SUPERFAMILY NAC domain 53 218 IPR036093 GO:0003677|GO:0006355
Amo15g1265 489 MobiDBLite consensus disorder prediction 226 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1265 Amo-Chr15 99335316 99339495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1265 57 218 NAC Transcription Factor Family AT4G28500 61.446 2.81e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo15g1265 NAM 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1265 - - adu:107491284 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4737 05 121319895 121324290 Amo15g1265 15 99335316 99339495 hybridization