LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g1194	ATGGGTTCGAGTGTTAAGAGCAGCAACCAAGGAAGCACTCAACTTGAACCACTTCAACAACAACATCATCATCATCATCGTCGTCATCATAATCAAATACAGCAAGAGCACCAAATCTCTTTCGGGATGATGCAATCTCCTTCATCATCATCCTCTATCATCCCGGGAAACTTGTTAAACAAGGATTCAGGTGYTGGTGGAGCTTATGATTTGGGTGAACTGGACCAAGCCCTTTTTCTCTACCTCGATGGACAAGCCGATCCCTCAAATACTCTTCATCAAGACCAAAGACAGAAGTCATCATCATCCGGAATGAGGCCTCATACGCTCAACATTTTCCCCTCTCAGCCTATGCACGTTCACCCATCATCATCCAATTCCAAGGCAAGTATGGAGTTAGTTTCTGCTTCCAAGAACGAACCCGCTTCTGCCACTGCTCCTCCTCCTCAACCACCTAAACCTGTCAAGCGAGACAGTAACCGCAAGGGTCCGACCTCAAGTTCTGAACAAGAAGGACCCAAAACACCAGACCCCAAGACACTGAGACGACTTGCTCAGAATAGAGAGGCAGCTCGCAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAGCAGCTAGAATCCAGTAGGATTAGGCTTAATCAGATTGAGCAAGAGCTACAGCGTGCTAGATCTCAAGGCATATTCTTCGGTGGAAGTGGAGTTATGGGTGGAGAACAAGGTCTTGGTGTGGGTATTAATGGCATAAGCACAGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCTAGAGGAGCACCACCGCCTAGTGTGCGAGCTGAGGGCGGCGGTGCAAGAACACCTACCTGAGAACGACCTCAGACTCTTTGTGGACAATTGCTTGGCGCATTACGACCAAGTTATGAACCTCAAGGGTTTAGTGGCCAGATCCGACGTCTTCCACCTTGTTTCCGGCATGTGGAAGACTCCGGCTGAGCGTTGCTTTATGTGGATCGGTGGATTCAGGCCCTCAGAACTCATTAAGATTATGGTGAGTCAAATAGAGCCTCTGACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCAACACAAGAAGCAGAAGAGGCTCTTTCCCAAGGCCTTGAGGCTCTCAATCAATCTCTCCTGAACACTATCACATCAGATTCTTTGAGCTCTCCTCCTGTTATGGCTACCTACATGGGACAGATGGCTCTCGCCATGAACAAGCTCGCTACTCTTGAAGATTTCGTCAAACAGATAATCTACGGCAGCAAACGGTGCACCGTCTGCATGAGATCCTAA	1308	0.4786	MGSSVKSSNQGSTQLEPLQQQHHHHHRRHHNQIQQEHQISFGMMQSPSSSSSIIPGNLLNKDSGXGGAYDLGELDQALFLYLDGQADPSNTLHQDQRQKSSSSGMRPHTLNIFPSQPMHVHPSSSNSKASMELVSASKNEPASATAPPPQPPKPVKRDSNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQIEQELQRARSQGIFFGGSGVMGGEQGLGVGINGISTEAAMFDVEYARWLEEHHRLVCELRAAVQEHLPENDLRLFVDNCLAHYDQVMNLKGLVARSDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIMVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLLNTITSDSLSSPPVMATYMGQMALAMNKLATLEDFVKQIIYGSKRCTVCMRS*	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g1194	435	CDD	bZIP_HBP1b-like	179	231	-	-
	Amo15g1194	435	MobiDBLite	consensus disorder prediction	35	58	-	-
	Amo15g1194	435	Pfam	bZIP transcription factor	179	207	IPR004827	GO:0003700\|GO:0006355
	Amo15g1194	435	Gene3D	-	178	226	-	-
	Amo15g1194	435	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	177	221	IPR004827	GO:0003700\|GO:0006355
	Amo15g1194	435	PANTHER	TRANSCRIPTION FACTOR TGA9	80	421	-	-
	Amo15g1194	435	MobiDBLite	consensus disorder prediction	86	195	-	-
	Amo15g1194	435	SUPERFAMILY	Leucine zipper domain	180	222	IPR046347	GO:0003700\|GO:0006355
	Amo15g1194	435	MobiDBLite	consensus disorder prediction	1	70	-	-
	Amo15g1194	435	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	182	197	IPR004827	GO:0003700\|GO:0006355
	Amo15g1194	435	MobiDBLite	consensus disorder prediction	175	191	-	-
	Amo15g1194	435	MobiDBLite	consensus disorder prediction	1	18	-	-
	Amo15g1194	435	Coils	Coil	198	225	-	-
	Amo15g1194	435	MobiDBLite	consensus disorder prediction	87	143	-	-
	Amo15g1194	435	SMART	brlzneu	175	261	IPR004827	GO:0003700\|GO:0006355
	Amo15g1194	435	PANTHER	BZIP TRANSCRIPTION FACTOR TGA10	80	421	-	-
	Amo15g1194	435	Pfam	Seed dormancy control	270	344	IPR025422	GO:0006351\|GO:0043565
	Amo15g1194	435	ProSiteProfiles	DOG1 domain profile.	252	435	IPR025422	GO:0006351\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g1194	Amo-Chr15	94708247	94714087	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g1194	56	421	Basic region leucine zipper (bZIP) Transcription Factor Gene Family	AT5G06839	59.750	3.15e-156	448

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Amo15g1194		DOG1	8.4e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g1194	K14431		-	gmx:100799713	582.022