Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1178 ATGGCAAATGACACTTCTGGTGCTGATTCCCATCATAAACGTCTTGGCCTTTTGAAAGATCAAGTTCACTTAGTTAAAAGGAAAGATTCTGATCGCTATGAGGTTGCATCAATCCAAGATCAATTATCATTTGAAAAGGGATTTTTCATAGTAATTCGTGCATGCCAAATGTTAGCCCAAAAGAATGATGGAATAATATTGGTGGGGGTGGCAGGTCCTTCAGGGGCTGGGAAGACTGTGTTTACTGAAAAGATACTTGGCTTCATGCCCAGCATTACAGTCATTTCGATGGACAATTACAATGATTCTAGTCGAATTGTTGATGGAAACTTTGATGATCCTCGGTTAACAGATTACGACACATTGCTCCAAAACCTACAAGATCTAAAGGATGGAAAGCCAGTTCAGGTTCCCATATATGATTTCAAGTCCAGCTCACGTACAGGATACAGGACAGTAGAACCGCCAAACTCCAGAATTGTAATTATAGAGGGCATCTATGCCTTGAGTGAGAAGCTGCGACCTCTACTAGACCTTCGAGTATCTGTTACAGGTGGAGTTCACCTTGACCTTGTAAAGCGAGTTATACGTGACATACAACGGGCTGGTCAAGAACCTGAAGAAATCATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCATTTATTGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAACCCATTTACTGGGTTCCAGAGTCCTACTTATATATTGAAGTCAGCAAGGAAGGTAGATCCGGATCAAATTAAGGCTGTTCTATCTGAAGATTTTAATGAAACCACAGAGCAGACTTATGACATATATCTTTTACCACCTGGTGAYGATCCAGAAACTTGCCAATCATATTTAAGGATGCGAAATAAGGAGGGGAAATACAGTCTCATGTTTGAGGAGTGGGTGACTGATAATCCATTTGTAATTTCACCAAGAATTACTTTTGAGGTCAGCGTGCGACTTCTTGGTGGATTAATGGCTCTGGGATACACGATAGCCACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAGCTAAATCGACATTATGTTCAGGTGCAAGGAAGAGATCGCTTAGTTATACAATACATAGGACAACAGCTGGGTCTGGAAGGCTCCTACATTCCTCGGACCTACATCGAGCAAATTCAACTTGAAAAGCTTGTAAACGAAGTTATGGCCCTACCAGATGATTTAAAGACAAAGCTCAGCCTAGATGAGGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCAGATAGGGTTGCATTGAGAAATAAATACATGAGAAGTGGAATGTCACAGTCATATACAAATCAAAGGGACAAAAATTTAGCCAAAGTTACTGGATATGCTGCTAAAAACCGAGGTTTTGGTGAAAGAAATTCCGATTCTTCAACAACTGCAACTCAGGGAGCCATCAACCAGCTTTCGAATCAAATTTCTGCCCTCAACGATAGAATGGATGACTTTACAAGTCGTATTGAAGAGCTGAATACCAAGTTAACCATAAAAAAAAGTTCCCCAAGCCAACAAAATATGTCGCTTCAGGCTGAGGCCTGCAGTGGTTCTGCTCCCACCTCATACTTTATCACTAGTTTGGGAAATGGTTCCCTAACTGGATCTAAATTGACTAATTCCTCATCTTCATCACAATTAGCTAAAGATTCTCCTTTACTAGATGAGATATCAGGTATAGCGCGCAGTCAGCGTCAGATCATGCACCAATTGGACAACCTCAATAATCTTCTCCGGGGGAGCTTGGGTGAAAAGTCTCATCAAACAAGAACCAGCAGCAGGAAGAGCATCGCTGGTGATTCAGATTCCACTGGAACTCGTGTTATGGCTGCAGTGACGGTTGGTTGTTTGGGGATATTCTTGATGAAGGGGTTATTGACCAGGAAATGA 1992 0.4142 MANDTSGADSHHKRLGLLKDQVHLVKRKDSDRYEVASIQDQLSFEKGFFIVIRACQMLAQKNDGIILVGVAGPSGAGKTVFTEKILGFMPSITVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLQDLKDGKPVQVPIYDFKSSSRTGYRTVEPPNSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSARKVDPDQIKAVLSEDFNETTEQTYDIYLLPPGDDPETCQSYLRMRNKEGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVIQYIGQQLGLEGSYIPRTYIEQIQLEKLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVALRNKYMRSGMSQSYTNQRDKNLAKVTGYAAKNRGFGERNSDSSTTATQGAINQLSNQISALNDRMDDFTSRIEELNTKLTIKKSSPSQQNMSLQAEACSGSAPTSYFITSLGNGSLTGSKLTNSSSSSQLAKDSPLLDEISGIARSQRQIMHQLDNLNNLLRGSLGEKSHQTRTSSRKSIAGDSDSTGTRVMAAVTVGCLGIFLMKGLLTRK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1178 663 Pfam CYTH domain 269 404 IPR023577 -
Amo15g1178 663 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Amo15g1178 663 Gene3D - 257 412 - -
Amo15g1178 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 236 IPR027417 -
Amo15g1178 663 CDD UMPK_like 67 239 - -
Amo15g1178 663 Gene3D - 66 245 IPR027417 -
Amo15g1178 663 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 5 650 - -
Amo15g1178 663 PRINTS Uridine kinase signature 132 147 - -
Amo15g1178 663 PRINTS Uridine kinase signature 65 82 - -
Amo15g1178 663 PRINTS Uridine kinase signature 188 198 - -
Amo15g1178 663 PRINTS Uridine kinase signature 224 237 - -
Amo15g1178 663 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Amo15g1178 663 Coils Coil 502 529 - -
Amo15g1178 663 PANTHER URIDINE KINASE 5 650 - -
Amo15g1178 663 SUPERFAMILY CYTH-like phosphatases 259 407 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1178 Amo-Chr15 93040193 93049505 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1178 66 236 PRT Gene Family AT4G26510 28.333 1.45e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1178 K00876 - gmx:100781286 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1967 14 49321279 49332103 Amo15g1178 15 93040193 93049505 hybridization
Amo15g1178 15 93040193 93049505 Amo01g4054 01 114832852 114837749 PCT