Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1165 ATGGTTTCAAGATTTGCCAATAATAACAATAATAATGATGCACTTGTTCCAGCAACTAAGAATATCAATAGGCCTAGCATGGTGGTGAATGTGAAGGTCTTGAAGAAGCTCTTCTCTGTTAACAACTATCAAAAGAAACCAAGAAGGAGAAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTAAGGAGTGTTATCCCAAGCCCCACAAAGATGGATAGAGCCTGTGTGGTGGGTGATGCCATTGAATATAATAAGGGAGCTGCTCAGAACGGTCTTAACCAGAATTTGACACTGCAGCTATCATGTGGCTTTCCTGTGGGGAAATCTCCCGGTTCTCCTGGTGTTGCTGTGGTTGTCGAAAGAGTTAGGATACGCGGACTGTCAAGGTTTAGAAACCTGAGTAAATTCGCACACTCCATAAAAGTGAAGGTGTTGCCTGCAGATCCAAATATTCGCATTCCAAACATAGAGATCTGTTTCCATAGGGCAATTTTGTGCGTCTTGTTCAGGAATGCATCTCTTGCTATAGGAATGTGCTCACAAGGCCAATGGGAAAAAGTTACCAAGGGTTCTTGGATTCGATCAATGTCTCTTTTTGACCACAAGCTCTTAGATATAAGGACTGCTAGCTCAACACTGGCATCCTCCTTAAGCAAATCGTTAGCATTTTATTATAGCAGTGCAATGACAATTGGGATCATTCTTGTGATACTTATGATTCTTTATCAGACTGAACATTGTGGATGGGGTGTAGAGGTAGCGAAACCATCAACAAAGGCGAATTCATAA 798 0.4135 MVSRFANNNNNNDALVPATKNINRPSMVVNVKVLKKLFSVNNYQKKPRRRKQRREQLNGKYKILRSVIPSPTKMDRACVVGDAIEYNKGAAQNGLNQNLTLQLSCGFPVGKSPGSPGVAVVVERVRIRGLSRFRNLSKFAHSIKVKVLPADPNIRIPNIEICFHRAILCVLFRNASLAIGMCSQGQWEKVTKGSWIRSMSLFDHKLLDIRTASSTLASSLSKSLAFYYSSAMTIGIILVILMILYQTEHCGWGVEVAKPSTKANS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1165 265 Pfam Helix-loop-helix DNA-binding domain 45 86 IPR011598 GO:0046983
Amo15g1165 265 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 215 247 - -
Amo15g1165 265 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 215 247 - -
Amo15g1165 265 Pfam NEMP family 216 248 IPR019358 -
Amo15g1165 265 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 95 215 - -
Amo15g1165 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 86 IPR036638 GO:0046983
Amo15g1165 265 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 95 215 - -
Amo15g1165 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Amo15g1165 265 Gene3D - 41 98 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1165 Amo-Chr15 92328286 92331036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1165 29 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 35.526 7.39e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g1165 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1165 - - ahf:112748261 222.246