Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1089 ATGAGTGACAAAGAGAAGTTTGAGCTTGACAGAAAGGAGGATCCCATGAATTATTCCACCGGAATGGCCTCGGATCGGAGATTCGGAGGTTCCAATCTTCTGAATTCATCTGTGGGTTTGGCTGGCAGAGGGGATCTAAATGGTTCCTCTTCATGTTCCTCTGCTTCCCTAGTGGACTCCTTTGGCCCAAACTTCTGGGACACTACGACGAATTCCCAGAACTTGGGGTTTTGTGGCATCAATGTTCACAACAGTGGGAGCTCTTTGAACCCAATTGAAATCAGAAAAGATGGGTTTGGATTTGGAAGAGGTGGTCATGATCATGGAACACTTGAAATGGGTTGGAATCAAGGTAATGGCTTTATACCAAATGAGTCTGCAATGTTCTCCCAGAACTTGTCTCGGTTTCCAAGTGATTCTGGATTTATTGAGCGTATTGAGCGTGCAACGAGATTCTCGTGCTTTGGTGGAGGGGATTTCGGAGATATGGTGAATGCTTATGGGATTCCTCAATCCATGGGCCCTTATGCTGGTACCGGTGGTGAGGCAATTCACCGAGCAAGAGATGGAGGACAACCTCAAGAGAGCAATCCGAATGAAGCTGAAGCTGAAGCTGTGAAAGATGCGACACCATCTGTGGAGTATCTTGCTACTAAAGCTAGCCCGCTCAAGAATGATAAAAGAAGTGAAAACCATGTAATGCCTCAAAATGAAGGACAACAAGGTCCTTCTAGGCCTCCGAATGAGACTGACCGAGCCAAATCTAGCGATGATGGCGGTGTTCAAGATGACTCCCCAATGTTGGATGGTGTTAGCGACGAACCTTGTGTTAAAGGACTAGATTCAAAGAAAAGGAAAAGAATTGGGCAGGATGCTGATAATGATAAAGCTGTTGAACTACCTACGGAAGGTGCAGGGGATATCTCTGAGAGCCAACAAAAGGGAGAGCAGGAACCTACTCCAACAAACAAAGCCTCTGGAAAGAATGCCAAACAAGGGCCTCAAGTTTCGGATCCACCTAAGGAGGAATACATACATGTCAGGGCTCGGCGGGGTCAAGCAACTAATAGCCACAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTTACTGGCAAGGCCGTAATGCTTGATGAAATAATTAACTATGTACAGTCGCTTCAACGACAGGTTGAGTTCTTGTCCATGAAACTCGCAACTGTAAATCCGCGGCTGGATTTTGATATTGAAGGACTTATCCCTAAAGATATTCTTCACCAACGGCCGGGTCCTTCTTCTGCATTGGGGTTTCCTTTAGAAATGTCTATGGCTTTCCCTCCGCTACACCCATCACAACCGGGACTAATTCAGCCAACTCTTCCTAGCATAGCCAACTCTTCTGATATCCTTCGGAGAACTGTTCATCCACAGTTGGCATCACCCGCTAGTGGAAGTTTCAAGGAGCCAAATCAGGTTCCTGATGTGTGGGAAGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCTACTACAACTGCTCCCATGAGTACCCAAGATGTGGATGGTACTGTGGCAGCAACTCAGATGAAGGTTGAACTTTGA 1629 0.4635 MSDKEKFELDRKEDPMNYSTGMASDRRFGGSNLLNSSVGLAGRGDLNGSSSCSSASLVDSFGPNFWDTTTNSQNLGFCGINVHNSGSSLNPIEIRKDGFGFGRGGHDHGTLEMGWNQGNGFIPNESAMFSQNLSRFPSDSGFIERIERATRFSCFGGGDFGDMVNAYGIPQSMGPYAGTGGEAIHRARDGGQPQESNPNEAEAEAVKDATPSVEYLATKASPLKNDKRSENHVMPQNEGQQGPSRPPNETDRAKSSDDGGVQDDSPMLDGVSDEPCVKGLDSKKRKRIGQDADNDKAVELPTEGAGDISESQQKGEQEPTPTNKASGKNAKQGPQVSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFDIEGLIPKDILHQRPGPSSALGFPLEMSMAFPPLHPSQPGLIQPTLPSIANSSDILRRTVHPQLASPASGSFKEPNQVPDVWEDELHNVVQMSFATTTAPMSTQDVDGTVAATQMKVEL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1089 542 PANTHER BHLH TRANSCRIPTION FACTOR 37 541 - -
Amo15g1089 542 MobiDBLite consensus disorder prediction 178 340 - -
Amo15g1089 542 SMART finulus 359 409 IPR011598 GO:0046983
Amo15g1089 542 MobiDBLite consensus disorder prediction 1 15 - -
Amo15g1089 542 Pfam Helix-loop-helix DNA-binding domain 356 404 IPR011598 GO:0046983
Amo15g1089 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 421 IPR036638 GO:0046983
Amo15g1089 542 Gene3D - 350 422 IPR036638 GO:0046983
Amo15g1089 542 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 541 IPR024097 GO:0006355
Amo15g1089 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 403 IPR011598 GO:0046983
Amo15g1089 542 CDD bHLH_AtBPE_like 343 428 - -
Amo15g1089 542 MobiDBLite consensus disorder prediction 276 300 - -
Amo15g1089 542 MobiDBLite consensus disorder prediction 306 333 - -
Amo15g1089 542 MobiDBLite consensus disorder prediction 234 249 - -
Amo15g1089 542 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1089 Amo-Chr15 85001647 85006280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1089 48 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.110 2.73e-102 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g1089 HLH 7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1089 - - aip:107643749 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1089 15 85001647 85006280 Amo15g1089 15 85001647 85006280 ECH