Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1062 TCGGGATCAGAGGAGCAAAGGAAGAAAAGGATCCTCAAGCAGAGGTTGAAGGCTCCACCAGCTTTGAACCAGTTCACCAAGACCCTTGACAAGAACCTAGGTGCGGACAAGAAGAAAGAATTTGCGCCAACCAATGCTGCTTTCTATTCCCTTGGAGCAGACCTCTTTCTGTCTCAGCTCAAAATTGAACATATTGCGCGCTTTTTAGGAGTTCCTTCTATCAGCATACCTGGGGATGGGAGCAATCTCACAAATTCAATTTCTTCAAAGCTCTACCATTTGCACCACAAGACTCCAAGAAACTTTATTAATGCACGCCAAGTGCTCTCTGATATGCATGCCTCTTTGATATTCCTCTCTGCTAAGGGTATGAAATTATTTTCAATTCTTTTATTCTGCTGCTCCTATGGTACTACTTTGTTTATACTTTGGTTTCTTAAACTTTCAACTATTTTTAACTGTTTCTTGCCATATGCCACCGACATTACATATGATAGTTTGGATTGTGGAAATGTAGAAGAAAGTGAAGAAAGAGAGACCTAA 543 0.407 SGSEEQRKKRILKQRLKAPPALNQFTKTLDKNLGADKKKEFAPTNAAFYSLGADLFLSQLKIEHIARFLGVPSISIPGDGSNLTNSISSKLYHLHHKTPRNFINARQVLSDMHASLIFLSAKGMKLFSILLFCCSYGTTLFILWFLKLSTIFNCFLPYATDITYDSLDCGNVEESEERET* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1062 180 PANTHER CW14 PROTEIN 31 78 - -
Amo15g1062 180 Gene3D - 4 44 IPR029064 -
Amo15g1062 180 PANTHER PLANT/F14N23-31 PROTEIN 31 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1062 Amo-Chr15 82862459 82866374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1062 6 34 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 89.655 1.72e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1062 - - ahf:112747878 85.1149