Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1044 ATGCCAACTGTCCTTTCAGTTACAATGGCTATTGGTTCACACAAATTGTCTCAGCAGGGTGCTATAACAAAGAGAATGACTGTAATTGAAGAAATGGCCGGAATGGATGTCCTATGCAGTGATAAAACAGGCACATTAACTCTCAACAAGCTTACAGTGGACAAGAATCTAATTGAGACCAAAAGGAGGTACTATTTCAACTACCAACCTGGTGATCAGCTTGCAATTGCTAAGGAAACAGGAAGGCGTCTTGGAATGGGCTCTAACATGTATCCTTCTTCGTCGCTGCTGGGAGAAAGCAAAGATAATTTTGCTTCTGTTCCCGTCGATGATCTTATAGAGAATGCAGATGGTTTCGCTAGTGCTTTCTTGGTAAAGCATAAATATGAGATTGTGAAGAGGTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAATGATGCACCAGCTTTGAAGATAGCAGACATAGGTATCGTTGTAGCAGATGCAACAGATGCTGCAAGAAGTGCCTCTGATATAGTTCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCTGTTTTAACTAGCCGTGAAATTTTCCAAAGAGTGAAAAACTACACAATATATGTTGTATCTATCACCATCCGTATTGTGGTTGGCTTTATGTTACTCACATGCATTTGGGAATTTAACTTTCCTCCCTTTATGGTTCTTGTCATAGCCATTCTCAATGATGAATAA 735 0.4041 MPTVLSVTMAIGSHKLSQQGAITKRMTVIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIETKRRYYFNYQPGDQLAIAKETGRRLGMGSNMYPSSSLLGESKDNFASVPVDDLIENADGFASAFLVKHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIVVADATDAARSASDIVLTEPGLSVIISAVLTSREIFQRVKNYTIYVVSITIRIVVGFMLLTCIWEFNFPPFMVLVIAILNDE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1044 244 Gene3D - 51 60 IPR023299 GO:0000166
Amo15g1044 244 PANTHER ATPASE 8, PLASMA MEMBRANE-TYPE 1 60 - -
Amo15g1044 244 PANTHER CALCIUM-TRANSPORTING ATPASE 71 243 - -
Amo15g1044 244 PRINTS H+-transporting ATPase (proton pump) signature 176 201 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo15g1044 244 PRINTS H+-transporting ATPase (proton pump) signature 117 133 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo15g1044 244 PRINTS H+-transporting ATPase (proton pump) signature 145 161 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo15g1044 244 SUPERFAMILY HAD-like 37 237 IPR036412 -
Amo15g1044 244 ProSitePatterns E1-E2 ATPases phosphorylation site. 41 47 IPR018303 -
Amo15g1044 244 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 126 225 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo15g1044 244 PANTHER ATPASE 8, PLASMA MEMBRANE-TYPE 71 243 - -
Amo15g1044 244 Gene3D - 36 50 IPR023214 -
Amo15g1044 244 Gene3D - 71 182 IPR023214 -
Amo15g1044 244 Gene3D - 1 35 - -
Amo15g1044 244 Gene3D - 183 243 - -
Amo15g1044 244 Pfam haloacid dehalogenase-like hydrolase 106 159 - -
Amo15g1044 244 PANTHER CALCIUM-TRANSPORTING ATPASE 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1044 Amo-Chr15 81449419 81452557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1044 1 59 Primary Pumps ATPases AT5G62670 96.610 1.00e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1044 K01535 - aip:107607271 384.03