Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1025 ATGAGGGTAGGGAAAGGGAACCAAGAAGAGGAAGAGTACGACGAAGAGGAATTCGGTTCTTCTAAGAAACAAGGCCCTTCCTCTGCCCCTAATAACGCCAATAACACCAACAAAGATGCCAAAGCTGTTGATAAAGCAAGCGTGATAAGATCAAAACATTCGGTGACTGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTTCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTCTTACTGGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCATATCAAGGTTGGGGTCATGAACCCTCAAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTGCAAAGCTTTGTTGGGCAACCWCAAGCCATAAAGAATGGTTCAGGTCCKGTGTCACCTTTTCCTGGAAAGTTTGACGAAAGCAACATTAGTATCTCTCCAACTATGCTTAGCGGCAACCAGAATATGATAGACACCGATCAGGGTAGGGATATTGTCAGCAAAGCATCCGAAGGACAAACTGATTTAGCTAGCAAGGGAATAGCTCTGCCCTTGGGTATGCACCCAAACATGTCTRTTCCTGTCAGAAGCGATGGTGTACTTTCACATCCTCTACAGGGATCTGTTTCAGAAGCGCAGTCAACTGAGTGCCCTGCCGCTAGTGAACCACTGAGCCAACAGGACGAGCTGACTATTGAAGGAGGGACAATCAGCATTTCTAGTGTGTACTCCCAAGGGTTGTTGAACAATCTGACTCAGGCACTACAGAGTGCTGGTTTAGATCTATCACAGGCCAGCATTTCGGTTCAGATTAATCTTGGAAAACGAGCAAACAATGGACCAAGCTGTGGGACCTCTTCTCCCAAGAATCACGACATGGTTCCTTCCAGCAACCAAGCTTTTGCACAGTTTAGAGATGCAGGCAGTGAAGACTCGGACCAAGCTCAGAAACGTCTGAAAACATTCAAGTGA 1017 0.4553 MRVGKGNQEEEEYDEEEFGSSKKQGPSSAPNNANNTNKDAKAVDKASVIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGHEPSKLMPWRNSHWRVQSFVGQPQAIKNGSGPVSPFPGKFDESNISISPTMLSGNQNMIDTDQGRDIVSKASEGQTDLASKGIALPLGMHPNMSXPVRSDGVLSHPLQGSVSEAQSTECPAASEPLSQQDELTIEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANNGPSCGTSSPKNHDMVPSSNQAFAQFRDAGSEDSDQAQKRLKTFK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1025 338 MobiDBLite consensus disorder prediction 137 242 - -
Amo15g1025 338 MobiDBLite consensus disorder prediction 218 242 - -
Amo15g1025 338 PANTHER TRANSCRIPTION FACTOR BIM2 1 336 - -
Amo15g1025 338 MobiDBLite consensus disorder prediction 43 61 - -
Amo15g1025 338 MobiDBLite consensus disorder prediction 291 338 - -
Amo15g1025 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Amo15g1025 338 CDD bHLH_AtBIM_like 47 123 - -
Amo15g1025 338 Gene3D - 45 117 IPR036638 GO:0046983
Amo15g1025 338 MobiDBLite consensus disorder prediction 154 189 - -
Amo15g1025 338 MobiDBLite consensus disorder prediction 291 320 - -
Amo15g1025 338 SMART finulus 54 104 IPR011598 GO:0046983
Amo15g1025 338 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Amo15g1025 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 119 IPR036638 GO:0046983
Amo15g1025 338 MobiDBLite consensus disorder prediction 22 41 - -
Amo15g1025 338 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 336 IPR044295 GO:0003700|GO:0006351|GO:0046983
Amo15g1025 338 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1025 Amo-Chr15 79898632 79904788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1025 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 59.016 6.86e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g1025 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1025 - - gmx:100816055 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g1025 15 79898632 79904788 Amo15g1025 15 79898632 79904788 ECH