Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g1022 ATGGCAGAGGTATTTGATATGTTAATGGATGTGAATGCAAGAAAACTTAATGGAACTTTCAAGGTTTATGTTGTCCATCTATGGGAAGTTCCAAATAGATTCAATGAAAAAGAGATCAATGGCATAGAGATAGTTCTTCAAGATATTCAGGGTGGAAGGATCCAAGCCTCAATCCCTAAACCTCTACTAAAGAAATGGAGAGGTAAGATTGTTGAGTTCAAGATGTACATCATGACCCATTTCATTGTGGTCGACAAGAAGGAAAAAATCAAGACAACCAACAATAGATGGTCCTTAAGTTTTTCACATAGGACCACAGTTCAGCCAGTTTCTAAACCAAGTTATCCTCTTGAAGCATTTAGCTTTAAGCCCATTCCGGAGCTGCTTGCTGCTGACAAGCTGGAAGATTCAGTTCTAATCGGAAAAACGTCAATGCAGAGTCATTTTGATATATCAAAGTTACGTATTAACCCTGATTTGGATGAAGTCAAAGATTTCCGTAACAGGAGGCTTTCTGGAAAGCCGTCTAACTCGACCAGGATAAGTCAAGTTACATTGCATGGTCTGCGATCTAGTGCAGACGAAATAAAAAATGGAGATGTCGTGGTCAAAACAATAGAAGAAGCCCTGAGCTCTTCACAGGATGATTGGTTCTATAAATCATGTCGAAAGTGTCCGAAGAAAGTAGAAACTCCAATTGGCAACAGATATGAGTGTGGCAAGTGTGGCCACACTCATGCAAGTGCATCACTTAGGTTTAAGGTTGAGGTATTAGTATATGATGGAACTGGGAGCATCATGTTGCTGATGTGGGATAGGGAGATGGCACAACTGTGTGGGAGGCAAGCTGAGCAGATAAAGGATGAGGAAAGTAGTGATGGAGAAGGTTATCCTCCTACATTGGATAGCATGATGGATAGGCGGTTACTCTTCAAAATAAATGTCAAAGCATCGAACATAAAACAGTATGACCATGTTTACACGGTCATGAAAATATGTGATGATGAAGATATTGTGGAGATGAATCACCCCAAACCAGTACAAAACAATGCTTCTGCTAATCTAATTGAGACCGGGTGCAGTGACTCAATTGGTATATCAGCGGTGGTGGTTAATATGCATAATGATACTGAATCTATGGTTTCTTTGTGTCACAAGCCTGAAGTCCAAAACGCCTGCAAAAAGAGCTCCCGTGGGGCTAAAGCAGTCCGTGCATATTAA 1221 0.407 MAEVFDMLMDVNARKLNGTFKVYVVHLWEVPNRFNEKEINGIEIVLQDIQGGRIQASIPKPLLKKWRGKIVEFKMYIMTHFIVVDKKEKIKTTNNRWSLSFSHRTTVQPVSKPSYPLEAFSFKPIPELLAADKLEDSVLIGKTSMQSHFDISKLRINPDLDEVKDFRNRRLSGKPSNSTRISQVTLHGLRSSADEIKNGDVVVKTIEEALSSSQDDWFYKSCRKCPKKVETPIGNRYECGKCGHTHASASLRFKVEVLVYDGTGSIMLLMWDREMAQLCGRQAEQIKDEESSDGEGYPPTLDSMMDRRLLFKINVKASNIKQYDHVYTVMKICDDEDIVEMNHPKPVQNNASANLIETGCSDSIGISAVVVNMHNDTESMVSLCHKPEVQNACKKSSRGAKAVRAY* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g1022 406 CDD RPA1_DBD_A_like 21 107 - -
Amo15g1022 406 Gene3D - 167 342 IPR012340 -
Amo15g1022 406 PANTHER REPLICATION FACTOR A 1, RFA1 212 356 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo15g1022 406 PANTHER BNAC01G35430D PROTEIN 212 356 - -
Amo15g1022 406 SUPERFAMILY Nucleic acid-binding proteins 11 111 IPR012340 -
Amo15g1022 406 PANTHER REPLICATION FACTOR A 1, RFA1 7 131 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo15g1022 406 PANTHER BNAC01G35430D PROTEIN 7 131 - -
Amo15g1022 406 Gene3D - 7 112 IPR012340 -
Amo15g1022 406 SUPERFAMILY Nucleic acid-binding proteins 213 336 IPR012340 -
Amo15g1022 406 CDD RPA1_DBD_C 214 332 IPR013955 -
Amo15g1022 406 Pfam Replication factor-A C terminal domain 213 332 IPR013955 -
Amo15g1022 406 Pfam Domain of unknown function DUF223 43 117 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g1022 Amo-Chr15 78571289 78573702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g1022 218 295 Core DNA Replication Machinery Family AT5G08020 32.051 2.49e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g1022 - - aip:107633426 400.208