Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0959 TCTAATGATGTTTCATTAACAACTTCAGGTCAATGTGGCTCTCATGGGGTTTCTAGCCGAGATAATTCAAGCAAAAGCAAATTGAGGGATCTCTTTGACAGCTCGAAATACGTGCTTAGCTTTGGGAGTAAGTTCGTTGGCTCCTGTTGGACTATAGAGGCTTATACCTATATATCTAGCAACCTCTTCCACAAAACAAACAAATTGGGCATTATATCTCTTGATATCCTGTATTCTAAGGACTTAATTGCAACTGGCAGTATTGATACGAATGCTATTATTTTTGATAGACCATCAAGACAAATATTATCTACACTCAGTGGTCATTCTAAAAAGGTTTTACTTTTCTTGGGATTGGGTGAATCGTTATTAACTAGTTCAGCAGATAAGACAGTTCATGTGTGGCAAGGCTTGGAAGAAGGTAACTATAACTGCAAACACATCCCGAGGGATCATACAGCTGAGAAACTTAATGGTATATTTTATATCTCTACCATTGGTGTCAGGGTTGGTATTCAATGTTTTACCATATGCTTCGGTTTTCTATAG 549 0.3752 SNDVSLTTSGQCGSHGVSSRDNSSKSKLRDLFDSSKYVLSFGSKFVGSCWTIEAYTYISSNLFHKTNKLGIISLDILYSKDLIATGSIDTNAIIFDRPSRQILSTLSGHSKKVLLFLGLGESLLTSSADKTVHVWQGLEEGNYNCKHIPRDHTAEKLNGIFYISTIGVRVGIQCFTICFGFL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0959 182 SMART WD40_4 99 136 IPR001680 GO:0005515
Amo15g0959 182 SMART WD40_4 59 96 IPR001680 GO:0005515
Amo15g0959 182 PANTHER PRE-MRNA-PROCESSING FACTOR 19 52 155 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Amo15g0959 182 MobiDBLite consensus disorder prediction 1 26 - -
Amo15g0959 182 Gene3D - 51 162 IPR015943 GO:0005515
Amo15g0959 182 SUPERFAMILY WD40 repeat-like 68 153 IPR036322 GO:0005515
Amo15g0959 182 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0959 Amo-Chr15 70813790 70815146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0959 43 155 U-box Gene Family AT1G04510 55.652 1.23e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0959 K10599 - gmx:100800213 158.303