Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0919 ATGGTGCTAGGTTGGAGTAGAAGGAGGAAGAACAACAATCACAAGGCTAATGGAAAACCAAGCATGGAGCTAGTGATTCCAAACCATTTCAGGTGCCCAATTTCCTTAGACCTAATGAAAGATCCTGTGACATTATCAACCGGCATAACATACGACAGAGAAAGCGTTGAAAGATGGTTTGATGATGGGAATTTCAAGTGCCCTGTCACAAACCAGATTGTGAAGAACTTTGACATGATCCCAAACCATTCTCTGAGGATGATGATCCAAGATTGGTGTGTGGAGAATAGGCAGCATGGTGTTGAGAGGATCCCAACACCAAGGATCCCAATTAGCCCAACCGATGTCTCTGATCTTCTTCTGCAACTTAAGGAATCTTCACTGCGCTTGGAACAGTTTACTTGCCTTGAATTGATTCAGAAGATGGAGAGATGGGGTGCCGAGAGTGAAAGGAACAAGAGGATTATAGTTGATAATGGAGCACCAGCTGCATTGGCATCAGCATTTGATTCATTTGCAGGTGATTCGGTTGAGAGAAATGTGGGTGTTCTTGATGAGATCCTTTCAGCACTGAAATGGATGTTCCCACTTCAATTGGAGGCTCAGAAATCATTGGGGTCCATTGCATCATTGAGCTGTATGGTTTGGTTCTTGAAGCACCAAGACCTCCCTGGAAAAGAAAAATCCATTGTTGCATTGAAGGAGCTTCTCTCCTTTGGTGACAGTAATAATGTTGAGGCACTTTCAAAGATTGAAGGGGTCAACGAACTCTTGGTGGAATTGGTCAACAAGAGAATTAGTCAAACAATAACAAAGAACTCACTGAGGGTGATCTGGTACATGGTTTCATCATCAAAATCTGAATGTGGTGAGAAGATGAAGATTTCATTTGTGGAGTTGGGTTTTGTGAATACCCTTTTGGGAGTCCTAATTGATTCAGAAAAGAGCATTTGTGAGAAGGCTTTGGCAATCTTTGATTGTCTTTGTAGCAGTGAGAAAGGGAGAGAAAGTGCTCTTGGGAATGATCTAACTATTCCTGTTTTGGTGAAGAAGGTTCTGAGGATTTCTTCACTCAGCACTGATTACTCTGTGTCTGCAATATGGAAGATGTGCAAATTTGGAGAAAGAGGTGATGAAGAAGGGAAGGTTCTTGTTGAGGCTCTTCAAGTTGGTGCATTCCAGAAGCTTCTCTTGGTTTTGCAGGTTGGTTGTGGTGATTCCACAAAGGAAAAAGCCACTGAGCTTCTCAAGTTGATGAATCCTTATAGGGCTGAATTGGAATGCATTGACTCTGATTTCAAGAATCTTAAGAGATCCTTCTAA 1323 0.4218 MVLGWSRRRKNNNHKANGKPSMELVIPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFDDGNFKCPVTNQIVKNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPRIPISPTDVSDLLLQLKESSLRLEQFTCLELIQKMERWGAESERNKRIIVDNGAPAALASAFDSFAGDSVERNVGVLDEILSALKWMFPLQLEAQKSLGSIASLSCMVWFLKHQDLPGKEKSIVALKELLSFGDSNNVEALSKIEGVNELLVELVNKRISQTITKNSLRVIWYMVSSSKSECGEKMKISFVELGFVNTLLGVLIDSEKSICEKALAIFDCLCSSEKGRESALGNDLTIPVLVKKVLRISSLSTDYSVSAIWKMCKFGERGDEEGKVLVEALQVGAFQKLLLVLQVGCGDSTKEKATELLKLMNPYRAELECIDSDFKNLKRSF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0919 440 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Amo15g0919 440 Gene3D - 116 429 IPR011989 -
Amo15g0919 440 SUPERFAMILY RING/U-box 21 102 - -
Amo15g0919 440 MobiDBLite consensus disorder prediction 1 20 - -
Amo15g0919 440 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 440 - -
Amo15g0919 440 SUPERFAMILY ARM repeat 114 406 IPR016024 -
Amo15g0919 440 CDD RING-Ubox_PUB 30 72 IPR045210 -
Amo15g0919 440 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Amo15g0919 440 PANTHER WDSAM1 PROTEIN 9 440 IPR045185 GO:0061630
Amo15g0919 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Amo15g0919 440 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0919 Amo-Chr15 65779342 65781463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0919 3 440 U-box Gene Family AT5G37490 42.316 1.20e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0919 - - gmx:100794340 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4323 05 113255298 113257548 Amo15g0919 15 65779342 65781463 hybridization