Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0752 ATGATTCAATCGCAGACTCAATTTCATTCCAGTAAGGTAGGAACCCTAAAATTGATTGCAATGGGGCGAGAAAAGATTGCGATTCGAAGGATCGACAATTCAACGAGCCAGCAAGTAACATTTTCGAAGAGAAGGAATAGATTGCTGAAGAAAGCTAAAGAATTATCCATTCTCTCTAATGCTAAAGTTGGATTGATTAAAAAGAGTAAGGAACTTGCAACTTGCCAGGGTGAAGTCAAGGCCTTAAGGGCAACTGAAGCTCTGAAGGATAAGGCCATAGAAGAGCTGAGAAATGAAGTTAGTAAACTGGATCAGAAACTTAGAATAACCGAGAATCATCTTAAGGACAAGAATCTAGAAATAAAGAAACTAACAGAAGAAAAGAAAGATGCCTTGGCTGCACAATATGTAGCAGAAGCAACTCTTAGAAGGGTACATTTAGATCAGAAGGATGATGATTATATTCCATTTAAGAGTGTGATCACTCCTCTTGAGGATGAGATCAAGTTGTATAAAAATGAGATTAAAGCACTGCAAAAAGATAAGAAGGCATTGGTACAATATGTTTATTTATTTAAAGATCATCTTGTTTATACTTTCTTTTATCATATATATATAGATATACCAGGAAGTGGTGGTTCTAATGCTAACAATCAATGGCGTAGTTTCTTCAAGCTTCTCAAGAAAGGCTCACAAATGCCATTTCAACCATTTCACATTCTTAAAAAGAATGTTCCTAAGCTAACTAGAAGGAAGAGTAAGAAGGCTGCAACTGATGACTTCAGCCATAGTATGGTTGTGTTAGTTTATTACATTTTTATGGTCAGAAATGATAATGTAATTGGGGAGGGAGGGTATGCAGAGGTATACTTAGAAAAATTGGAAGATGGAACCTTTGTTGCCATAAAGAAGCTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGAATCATATGCTGCATTTTATCTTTGCTTAGTAAATTTTGTCTCTCTTCGACATTGCACAACCGCTGGCTGAAGCAGGCTACCCTGCAGTTGCATCTGACTCATTTTGATCCTCGGTGTTACAAGTCTGGCATCTCACATTCCCCTGCAGCTCTAGTATCCTTGGTTGGTAGCTCTCAAACAAGTTCAGTGCCTTCCTCTGTCAAAATAGAGTCACCTATAACTAAAATTCAAACATCTATTTCATCAACTAAAAATGAAGTTGAGCAGGCTGGATGA 1242 0.3752 MIQSQTQFHSSKVGTLKLIAMGREKIAIRRIDNSTSQQVTFSKRRNRLLKKAKELSILSNAKVGLIKKSKELATCQGEVKALRATEALKDKAIEELRNEVSKLDQKLRITENHLKDKNLEIKKLTEEKKDALAAQYVAEATLRRVHLDQKDDDYIPFKSVITPLEDEIKLYKNEIKALQKDKKALVQYVYLFKDHLVYTFFYHIYIDIPGSGGSNANNQWRSFFKLLKKGSQMPFQPFHILKKNVPKLTRRKSKKAATDDFSHSMVVLVYYIFMVRNDNVIGEGGYAEVYLEKLEDGTFVAIKKLTRGNQEEMTADFLSELGIICCILSLLSKFCLSSTLHNRWLKQATLQLHLTHFDPRCYKSGISHSPAALVSLVGSSQTSSVPSSVKIESPITKIQTSISSTKNEVEQAG* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0752 413 Pfam Microtubule-associated protein 70 64 187 IPR009768 GO:0007010|GO:0008017
Amo15g0752 413 Coils Coil 161 188 - -
Amo15g0752 413 ProSiteProfiles MADS-box domain profile. 21 66 IPR002100 GO:0003677|GO:0046983
Amo15g0752 413 SUPERFAMILY Protein kinase-like (PK-like) 275 348 IPR011009 -
Amo15g0752 413 SMART madsneu2 21 75 IPR002100 GO:0003677|GO:0046983
Amo15g0752 413 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 66 IPR002100 GO:0003677|GO:0046983
Amo15g0752 413 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Amo15g0752 413 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Amo15g0752 413 SUPERFAMILY SRF-like 21 69 IPR036879 GO:0003677|GO:0046983
Amo15g0752 413 Gene3D Phosphorylase Kinase; domain 1 241 329 - -
Amo15g0752 413 Coils Coil 79 134 - -
Amo15g0752 413 PANTHER MICROTUBULE-ASSOCIATED PROTEIN 70-2 63 186 IPR009768 GO:0007010|GO:0008017
Amo15g0752 413 Gene3D - 33 83 IPR036879 GO:0003677|GO:0046983
Amo15g0752 413 PANTHER MYOSIN II HEAVY CHAIN FAMILY PROTEIN 63 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0752 Amo-Chr15 51314069 51316889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0752 21 66 MADS-box Gene Family AT2G14210 80.435 2.11e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo15g0752 MAP70 5.3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0752 - - aip:107627709 219.55