Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0742 ATGGATCTGATTGGTTTGGTCTTGGTCATCAACCTCGCAATGTTCTCCTCCTCCGTGTACGGCTATGGCGGAGGAGGGTGGATTAACGCACATGCTACCTTCTATGGTGGGAGTGATGCTTCAGGAACAATGGGTGGGGCGTGTGGGTATGGGAACCTGTATAGTCAAGGTTATGGAACAAACACAGCAGCTTTGAGCACTGCACTGTTCAACAATGGTTTGAGCTGTGGTTCATGCTATGAGATAAGGTGTGTGAATGACCGTAGGTGGTGCCTACCTGGCTCCGTAATGGTAACTGCCACCAATTTCTGCCCTCCAAACAATGCCTTACCCAATAATGCAGGAGGGTGGTGCAACCCTCCCTTGCACCACTTTGATCTTGCTCAGCCTGTTTTCTTGCGCATTGCGCAATACAGAGCTGGAATTGTCCCTGTTTCTTATAGAAGAGTACCCTGCAGGAGAAGGGGAGGAATAAGGTTCACAATCAATGGCCACTCATACTTCAACCTAGTCTTGGTGACAAACGTTGGCGGCGCCGGCGACGTTCATGGCGTGGCCATTAAGGGTTCAAGAACTGGGTGGATGCCAATGTCAAAAAACTGGGGACAGAATTGGCAGAGCAACAACTACCTCAACGGCCAAAGTCTCTCCTTCAAAGTCACCACCAGTGATGGCCGTAGTGTGGTCTCTTACAATGTTGCCCCAGCTGGATGGTCATTTGGCCAAAGCTACACTGGAGCCCAATTCCATTAA 753 0.5007 MDLIGLVLVINLAMFSSSVYGYGGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDRRWCLPGSVMVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTGWMPMSKNWGQNWQSNNYLNGQSLSFKVTTSDGRSVVSYNVAPAGWSFGQSYTGAQFH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0742 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Amo15g0742 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Amo15g0742 250 Gene3D - 15 153 IPR036908 -
Amo15g0742 250 SUPERFAMILY Barwin-like endoglucanases 26 175 IPR036908 -
Amo15g0742 250 SMART dpbb_1 62 147 IPR007112 -
Amo15g0742 250 Gene3D - 157 250 IPR036749 -
Amo15g0742 250 PANTHER EXPANSIN-A15 8 250 IPR002963 GO:0009664
Amo15g0742 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Amo15g0742 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Amo15g0742 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Amo15g0742 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Amo15g0742 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Amo15g0742 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Amo15g0742 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Amo15g0742 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Amo15g0742 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Amo15g0742 250 PANTHER EXPANSIN 8 250 - -
Amo15g0742 250 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Amo15g0742 250 Pfam Lytic transglycolase 62 147 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0742 Amo-Chr15 50901726 50904761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0742 1 250 Expansin Gene Family AT2G03090 80.800 2.29e-150 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0742 - - gmx:100796316 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0742 15 50901726 50904761 Amo15g0742 15 50901726 50904761 ECH
Amo15g0742 15 50901726 50904761 Amo20g3337 20 141866776 141869548 ECH