Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0735 ATGGGAGTTTTCTACACAGACATGGGTTCTCTCTCTCTTCGCACGCTTTCATCATCAACAACTCTTTCTTCATCGCAAAAGAGAAGTAATTATTATACCAAGGAAATGCATAACCATAATAATGACAATGGAAGAGGAACAACTACTTCAAGCTTATTTCCATTTCATCATCAGTTTATGAGGGATTGCCGTTCTAGAAATTTTCAAGAACACCCCTGTAATAATAAAGATTCTGATTATGATTCCAGTGAGGATGGCAATGAAAAATTCCACAACCATGAAGAAGAAGCAGCAGCAGCAGCAACTAATAAGTTCAATGATGATGAAGAGAACCCTAATGAGGAGAAGTATTGCATGATGAGTAGTGGGAAAGAGGTAAATAGCAGTGAAAAGTCCAAAGTGTGTGCAAGAGGGCATTGGAGGCCTTCAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCAGAACTGGAACCTCATTGCTCAGAATCTAGAAGGAAGATCAGCAACTATTACTCACATGGCTACTGCTTGTTGGAGACAACAACAAGATAATAATAATGAAGAGGACCCTAATGGCTTCTATAATCAACAACAGTTTCCTTTTGATTATTGTTTCTTCTCTGCTGGTGCAACTAGCAATTATGATAGGTATTATTGGGATAATACTAATGACGACGGTGATGAATATCATAATCTTCGTCATACTCATCCCCAACAATATCTCTATCAAATGCAAATGCCAAAAGACCACAACTTTTACAGTTACTCATCGGGTTCCTCTTCAACAATTACAACAACACCCCATGTTTGTTTGGCCATGGAGCTATCATCGTCATCAACAACATCATCCTTTGCTCAAGACAGGAACAAGGTCCCTATTAGGGACCCCCATGATGCATCTTCTAATTATACACCACCATTTATTGACTTCCTCGGAGTAGGAGCCACATGA 963 0.3977 MGVFYTDMGSLSLRTLSSSTTLSSSQKRSNYYTKEMHNHNNDNGRGTTTSSLFPFHHQFMRDCRSRNFQEHPCNNKDSDYDSSEDGNEKFHNHEEEAAAAATNKFNDDEENPNEEKYCMMSSGKEVNSSEKSKVCARGHWRPSEDSKLKELVALHGPQNWNLIAQNLEGRSATITHMATACWRQQQDNNNEEDPNGFYNQQQFPFDYCFFSAGATSNYDRYYWDNTNDDGDEYHNLRHTHPQQYLYQMQMPKDHNFYSYSSGSSSTITTTPHVCLAMELSSSSTTSSFAQDRNKVPIRDPHDASSNYTPPFIDFLGVGAT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0735 320 PANTHER MYB TRANSCRIPTION FACTOR 193 320 - -
Amo15g0735 320 PANTHER MYB PROTEIN-RELATED 193 320 - -
Amo15g0735 320 PANTHER MYB PROTEIN-RELATED 1 172 - -
Amo15g0735 320 ProSiteProfiles Myb-like domain profile. 137 171 IPR001005 -
Amo15g0735 320 CDD SANT 140 172 IPR001005 -
Amo15g0735 320 Gene3D - 128 188 - -
Amo15g0735 320 SMART sant 136 184 IPR001005 -
Amo15g0735 320 SUPERFAMILY Homeodomain-like 135 172 IPR009057 -
Amo15g0735 320 Pfam Myb-like DNA-binding domain 137 172 IPR001005 -
Amo15g0735 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 172 IPR017930 -
Amo15g0735 320 PANTHER MYB TRANSCRIPTION FACTOR 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0735 Amo-Chr15 50436848 50439060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0735 91 172 MYB Transcription Factor Family AT5G17800 48.780 7.76e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo15g0735 Myb_DNA-binding 4.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0735 K09422 - gmx:100789305 107.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0735 15 50436848 50439060 Amo15g0735 15 50436848 50439060 ECH