Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0711 ATGGATTCCACCCCTCCGTTTAGTTGTGGTGACGATGACACAGATTGGCTAAGTGAAGAAGATTTTTCTGGTGTGGCTAGCTTTAGTGGGAAGGACGAGGAACCCTCGTTTGAGACTGACTCTGAGGGAGGCGACACGACTGAAGAGGTCCACGGGAACGGATTTGGCGTAGACCCGGTGCCAAGTGACGGGGATGCTCCCGGCTTCAGGTCCACGGAGGATTTTGTGGACCAGGTGTTTAAGACCGAGGAAGAGGCATATGCGGCGTACAAACAATTTGCCCGCTTAAGGGGGTTTGGGGTAAGGAAGGGTGACGTGGCTCGAGTAGACGGTGTTTTGGTGCAGCGAGAATTTTTTTGCCACCGGGAGGGTACAAGGCATGCAAAACACTACGATCGTCCAGACAGAGTCCGAGAGGAGAAGTTGGAGAGTCGCACGGGTTGTACGGCAAAGTTGAAAATTTACTTAGATGCACAAGATCAGGTTTGGAAGGTCAGGAGGATCGACGACAGCCACAACCACCTTCTTGCTGCATCTATGTTTAATCATCTTCTTCCTAGTCATCGGAGTTTGAGCAAGAGCGATAAGGCGCAGGTTGATAGTTTGAAGAAGTTCGGTCTGGATAAGATAGAGCTATTTGCTTCGAAGATATACACCAGAAGTGTTTTCAAGGAGGTCAGGAAACAAATCAAAGGGGTCGGGGGTTTACTGTTTCTCGAAAAAGACACCATTAGCACGATATCGGTGTACAAGTTCTCAAGCACGGCAAACCGTCGTAGTGTCCGCAGGGTGCTGTATGATCCAACTGAGCCTAAGATTGAGTGTGACTGTCATATGTGGAGCAGTGAAGACGCCAAGGAATGGACGCCAAAAGAAACAGAACGGGAAGAGGCGCACGGTTCTCGGTTACTAAGGTACGACACCTTGTCCAGTGCAATGAGTGCAGTAGCGAAACTTGCTTCGGAGGATGCTGGTAAGTTCACAGTGGCCAGGAATGTCATAGCCTCATTGGCACATAAACTACACGGACAAACTGGCAACACAGTTGATCATCATGCTGCAGTGACTCATAAGGAAGTTGTGAAGGAGCCGTCCGTTGCCAGGACTAAGGGGGCCCCTAAGCATGGTAGGGAAACTGCGAGTTTAGCACAGGATGAGCCTGGGGGCAAGAGGCGTTGCTGTAGTTCTTGCGGGCAGCCAAGTCACACGAAGAGGACATGCTCATCCAAACGGGAAGTGAGCCATAACGGTGTCCGAGAAGGGATGTCCTTGACTCGCGAGGATTCATCATCCGGAGACCCCAGGGGGAATCGCGAACGACATGACCGTTCGGAGGTATGTTTCTTCCCTACACTCATTTTTTAG 1365 0.5077 MDSTPPFSCGDDDTDWLSEEDFSGVASFSGKDEEPSFETDSEGGDTTEEVHGNGFGVDPVPSDGDAPGFRSTEDFVDQVFKTEEEAYAAYKQFARLRGFGVRKGDVARVDGVLVQREFFCHREGTRHAKHYDRPDRVREEKLESRTGCTAKLKIYLDAQDQVWKVRRIDDSHNHLLAASMFNHLLPSHRSLSKSDKAQVDSLKKFGLDKIELFASKIYTRSVFKEVRKQIKGVGGLLFLEKDTISTISVYKFSSTANRRSVRRVLYDPTEPKIECDCHMWSSEDAKEWTPKETEREEAHGSRLLRYDTLSSAMSAVAKLASEDAGKFTVARNVIASLAHKLHGQTGNTVDHHAAVTHKEVVKEPSVARTKGAPKHGRETASLAQDEPGGKRRCCSSCGQPSHTKRTCSSKREVSHNGVREGMSLTREDSSSGDPRGNRERHDRSEVCFFPTLIF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0711 454 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 27 177 - -
Amo15g0711 454 MobiDBLite consensus disorder prediction 361 442 - -
Amo15g0711 454 Pfam FAR1 DNA-binding domain 90 176 IPR004330 -
Amo15g0711 454 MobiDBLite consensus disorder prediction 361 385 - -
Amo15g0711 454 MobiDBLite consensus disorder prediction 1 71 - -
Amo15g0711 454 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 177 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0711 Amo-Chr15 47450896 47453292 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo15g0711 FAR1 4.3e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0711 - - aip:107640633 426.402