Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0707 ATGGAGTCAGATCTTCAGGCACCGAGTTCGAACGGGTTGACACGGTACCGATCGGCACCGAGTTCATACTTCACGGACATAATTGACCGCGAATTCTACGAGCACATTTTCAACCGTCCGTCAAGTCCAGAAACAGAGCGAGTCTTCTCCAGGTTCATGAACAGTCTCCGTGACGATGCTGCACCTGAAGACGATTCACTCCATCTCGATTCTTCTTCTGTCAAAGAAGAACACGATATCACTCCCTCGCAACCTCTTCTCTTTCAACACCACCAGCAGCAGCAGCAGAACAACGTCAATAGCTTCAACTATCAAAGCACGTCGAGACCGCCGTTGCCGAATCAGAATCTTGCTTCCTCCGGTGGTGTAGAAGGAGTGTATTCTAATAATAATAATAACAATAATCGGTTGCCGCAGATGAAGAATCAATCTAATCTTGTTAGGCACAGTAGCTCACCTGCTGGACTATTTTCCCAAATTCACATTGAAAATGGGTATGTTGTTGATATGCGAGGGATGGGAACTTTAGGAGCAGTAAATAAGAGTGTGGAAGAAGTGAAGTTCTCTTCTTCAAGGACAAGGAGGTTGAAGAATCCACAGAACTACTCCTCCTCCGCCTCCGGGAGAATGTCTTCAATAGCTGAGATTGGCAATAGGGACAGCAGAGAAGACAATCCAGATGCTGAAGCTTTTGGGGAAACCCAGGGCGAGGATTTCATCACGGAGTTCGCGCCCTGGGATGATTCCGTCGCCGTGAATGACATTGTTGCTGGTCTAAAAAGATTCAGAGATGATGATGTSAAGCCATTTTCTTCTGGTTTGAATGCAGCTGAGACTCAGAACGAAAGTAGAGGACAGCAAGCTGCTCCTTTGGCTCATCAAATGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTCTTGCAATTTTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATAAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTGGCTGTCGATTACATCAAAGACCTTCAAAAGCAAGTTGAGACGCTTTCAGACTGTCAAGCTAAGTGTACGTGTTCTTCCAAGCCACAGCAATAA 1200 0.4575 MESDLQAPSSNGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSRFMNSLRDDAAPEDDSLHLDSSSVKEEHDITPSQPLLFQHHQQQQQNNVNSFNYQSTSRPPLPNQNLASSGGVEGVYSNNNNNNNRLPQMKNQSNLVRHSSSPAGLFSQIHIENGYVVDMRGMGTLGAVNKSVEEVKFSSSRTRRLKNPQNYSSSASGRMSSIAEIGNRDSREDNPDAEAFGETQGEDFITEFAPWDDSVAVNDIVAGLKRFRDDDVKPFSSGLNAAETQNESRGQQAAPLAHQMSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCQAKCTCSSKPQQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0707 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Amo15g0707 399 MobiDBLite consensus disorder prediction 59 77 - -
Amo15g0707 399 SMART finulus 333 383 IPR011598 GO:0046983
Amo15g0707 399 MobiDBLite consensus disorder prediction 191 210 - -
Amo15g0707 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 91 396 - -
Amo15g0707 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 389 IPR036638 GO:0046983
Amo15g0707 399 Gene3D - 328 396 IPR036638 GO:0046983
Amo15g0707 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 62 - -
Amo15g0707 399 MobiDBLite consensus disorder prediction 193 210 - -
Amo15g0707 399 MobiDBLite consensus disorder prediction 101 139 - -
Amo15g0707 399 Pfam Helix-loop-helix DNA-binding domain 332 378 IPR011598 GO:0046983
Amo15g0707 399 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 62 - -
Amo15g0707 399 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 91 396 - -
Amo15g0707 399 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0707 Amo-Chr15 47359002 47361921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0707 6 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.756 1.53e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo15g0707 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0707 - - gmx:100805812 489.574