Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0604 ATGGACTTAACCCCAATTGATGCAAGCACCACCCACACCCAAACCCAAACCCAAACCATAGAACACACAAACTCACAACAAACACAAACCCCACCACCACCAACAACGAACGGTTCCCTCAAACGCCACCACCCGCTCCCGGCCACCGCTATTGCCGCCGCACCACCACTCTCCATGGTAATTTCCTACAAGGAGTGCCTCAAGAACCATGCAGCCACCATCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCCTCCTCCTCCTCCAACCCCTCTGAGCCACGCTCCCTCACTTGCGCCGCATGTGGCTGCCACCGCAACTTCCACCGCCGCGACCCAGAATCCCTCCTCCCCCACCACCACCACCACCACCCAAACTTCCTCAGCTTCTACCACCACTCATCATCGCCGCCTCTCCCCCAGCGTGGTGGACTCAGCCTCAGCACAAGCCCAAGCACAACAAGCCCAAGCCCAAGCCCATCAGCAAGTCCAATTTCAAGCCCATCATCACCACCACCTGCCCCACTCTCTCACCACTTTCCTCCTCCTCCTCCGTACTCCTCCTTCCACCACCATCACATGAATAATAATTCTCCATCTACCGTTGTTGTTCCCAACATGCTCTTATCCCTTGGAAATGCCGCATGCTCTTCCGGTTCTGGATTCAACCACCAGAAAGACTTGAACAGCTCGAAGAAGAGGCATAGGACCAAGTTCAGCAAGGAACAGAAGGAGAAGATGCTGAGATTCTCAGAGAAGCTTGGTTGGAGAATGCAGAGAGATGAAGATGGTTTGATTCAAGAGTTTTGCAACCAAATTGGGGTTTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCTTCTTCAGAAACAGGAACAACAACAACAACAACGATAATGCTTCTGCTGCAGAAAAGAATGGGAGTCTTAATGGTGTTGATAATGGTAACCATATCGATAACGATAATGATGATGATCATAATAATAATGATAATGGAAATGGTAATCAACACAGCAACAACACTAGTAGCAGCAACGATGACATTCACAGAGATTATTAA 1077 0.5079 MDLTPIDASTTHTQTQTQTIEHTNSQQTQTPPPPTTNGSLKRHHPLPATAIAAAPPLSMVISYKECLKNHAATIGGHALDGCGEFMPSSSSNPSEPRSLTCAACGCHRNFHRRDPESLLPHHHHHHPNFLSFYHHSSSPPLPQRGGLSLSTSPSTTSPSPSPSASPISSPSSPPPAPLSHHFPPPPPYSSFHHHHMNNNSPSTVVVPNMLLSLGNAACSSGSGFNHQKDLNSSKKRHRTKFSKEQKEKMLRFSEKLGWRMQRDEDGLIQEFCNQIGVSRGVFKVWMHNNKNTFFRNRNNNNNNDNASAAEKNGSLNGVDNGNHIDNDNDDDHNNNDNGNGNQHSNNTSSSNDDIHRDY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0604 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 41 303 - -
Amo15g0604 358 MobiDBLite consensus disorder prediction 1 37 - -
Amo15g0604 358 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Amo15g0604 358 MobiDBLite consensus disorder prediction 1 43 - -
Amo15g0604 358 Gene3D - 218 293 - -
Amo15g0604 358 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Amo15g0604 358 MobiDBLite consensus disorder prediction 294 322 - -
Amo15g0604 358 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 234 291 IPR006455 -
Amo15g0604 358 MobiDBLite consensus disorder prediction 159 190 - -
Amo15g0604 358 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 303 - -
Amo15g0604 358 MobiDBLite consensus disorder prediction 220 246 - -
Amo15g0604 358 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Amo15g0604 358 SUPERFAMILY Homeodomain-like 220 293 IPR009057 -
Amo15g0604 358 MobiDBLite consensus disorder prediction 134 195 - -
Amo15g0604 358 MobiDBLite consensus disorder prediction 134 158 - -
Amo15g0604 358 MobiDBLite consensus disorder prediction 294 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0604 Amo-Chr15 38448511 38449979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0604 46 309 ZF-HD Transcription Factor Family AT2G02540 35.231 2.53e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo15g0604 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0604 - - ahf:112803563 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0604 15 38448511 38449979 Amo15g0604 15 38448511 38449979 ECH
Amo05g2766 05 69153389 69154856 Amo15g0604 15 38448511 38449979 hybridization