Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0599 ATGAAGAGTGAATTGGAATTACCACCTGGATTCAGGTTCCACCCCACTGATGAGGAGCTTGTGAATCACTACTTGTGCAAGAAATGTGCTTCACAGTCAATTGCTGTTCCTATCATCAAGGAGATCGATTTGTACAAGTTTGATCCATGGCACCTTCCAGAGATGGCTCTATACGGCGAGAAAGAGTGGTATTTCTTCTCTCCTAGGGACCGCAAATATCCGAACGGATCACGCCCAAACCGGGCTGCGGGTTCAGGGTACTGGAAGGCCACAGGTGCTGATAAGCCCATTGGAAAGCCCAAGGCCCTGGCCATCAAGAAGGCACTGGTGTTTTACGCGGGGAAAGCCCCCAAGGGAGTGAAAACCAATTGGATCATGCATGAATATAGACTCGCTAATGTTGACAGATCCGCAGGCAACAAGAAAAATAACTTAAGGGTATGTCGTGCTCTATGCACCTTAATTTCAATCTCACAACATTTTAGATTTGGTAAAAAATATAATGATTGGGAATTATTGCAGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGAAAGATTGAGAAATACAACCATCTTGGAGCGGCGGATCACAAATCAGCATCGTCGGAGGAGGAGAATGAGAGGAAGCCGGAGGTGAAGGAGCGATTGCATATGGATACGTCGTCGGATTCGGTGGTATCGGCGGATGTGACGTGGGAGAGTAGGGAGGTGCAGAGCGAGCCAAAGTGGAATGACCTGCTTGACCAGGTCTTTGATTTCCAGTTAGGCAGTTTCGTTGATTTCTCATCGGCTGGAGATGACCCTTTTGCCCCCCAGCTCTCTCCTTGGCACCAGGACACGTTCATCACATTTTAA 867 0.4752 MKSELELPPGFRFHPTDEELVNHYLCKKCASQSIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALAIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGNKKNNLRVCRALCTLISISQHFRFGKKYNDWELLQLDDWVLCRIYNKKGKIEKYNHLGAADHKSASSEEENERKPEVKERLHMDTSSDSVVSADVTWESREVQSEPKWNDLLDQVFDFQLGSFVDFSSAGDDPFAPQLSPWHQDTFITF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0599 288 Gene3D NAC domain 16 191 IPR036093 GO:0003677|GO:0006355
Amo15g0599 288 MobiDBLite consensus disorder prediction 199 225 - -
Amo15g0599 288 SUPERFAMILY NAC domain 4 151 IPR036093 GO:0003677|GO:0006355
Amo15g0599 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102 167 259 - -
Amo15g0599 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102 1 148 - -
Amo15g0599 288 PANTHER NAC TRANSCRIPTION FACTOR 56 167 259 - -
Amo15g0599 288 PANTHER NAC TRANSCRIPTION FACTOR 56 1 148 - -
Amo15g0599 288 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Amo15g0599 288 ProSiteProfiles NAC domain profile. 7 186 IPR003441 GO:0003677|GO:0006355
Amo15g0599 288 MobiDBLite consensus disorder prediction 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0599 Amo-Chr15 37947636 37949372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0599 1 288 NAC Transcription Factor Family AT5G08790 58.278 1.91e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo15g0599 NAM 8.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0599 - - mtr:MTR_3g096920 357.836