Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0594 ATGAGCGATCACTTGGTGCTATTCGTCGACCGTCTCGGGCGCCCCGCCGATCCCGTCGCACAGCCCGCTCAGCTCCCAGTTGATCCCTCGCCGCCGCCGGCGGAAGTGGTCCACGGACCTTCTGGATCCGCTCCGGCAGCGGATCGCGACGTTGAGTTGGAACACGGCGGCGATGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACAGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTCAAGTATGCACACAGAAAGTGCGTCCAGCATTGGTGCAATGAGAAGGGAGACATAACTTGTGAGATATGCCATCAGCCTTATCAACCTGGTTATACTGCTCCACCACCACGCCCGCAGCCCGAAGAAACTACCATTGACATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGCGATCCTCGACTATTGGCAATTGCAGAGGCTGAACGCCAATTTTTGGATGCGGAATATGATGAATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCAGCTCTAATTTTAATGGCCCTCTTACTCTTGCGGCATGCACTTTCTGTCACTGATGGTGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTACGTGCTGCTGGATTTCTTTTACCTTGCTATATAATGGCTTGGGCAATTAGTATTCTGCAGCGTCGGCGACAGAGACAGGAAGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTCCTACAGTCTGGGCAGCACAGGGGGCTTCAATTTGCCATAGCCCCAGGACCACCACCCACTGTACAGCAGGAACAAGTGTGA 870 0.5414 MSDHLVLFVDRLGRPADPVAQPAQLPVDPSPPPAEVVHGPSGSAPAADRDVELEHGGDDEEEPLIQMAECRICQEEDSVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0594 289 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Amo15g0594 289 CDD RING_CH-C4HC3_MARCH 70 116 - -
Amo15g0594 289 MobiDBLite consensus disorder prediction 22 38 - -
Amo15g0594 289 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Amo15g0594 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 278 - -
Amo15g0594 289 Coils Coil 158 178 - -
Amo15g0594 289 MobiDBLite consensus disorder prediction 16 49 - -
Amo15g0594 289 SUPERFAMILY RING/U-box 68 120 - -
Amo15g0594 289 SMART ringv_2 69 116 IPR011016 GO:0008270
Amo15g0594 289 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Amo15g0594 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 125 IPR013083 -
Amo15g0594 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 278 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0594 Amo-Chr15 37626850 37630030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0594 24 119 C3H Transcription Factor Family AT2G22120 34.343 6.91e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0594 - - gmx:100779674 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0594 15 37626850 37630030 Amo15g0594 15 37626850 37630030 ECH
Amo05g2768 05 69255621 69258620 Amo15g0594 15 37626850 37630030 hybridization