Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0593 ATGTTAAATGTTGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTCGGCGAACCGGGTTACCCAGTTATGTTTACTGGTCCATTTCGTGAGAATGTGAATGCACTTCTTGAATATGCGAATTCGGAGAGTAACTTGGGAATGGGAATGCCAATGTGGTCTTTTCAGCTTGAAGTTCATCACCACCCTCCTTTGCATATTTTCTTGTTTGTGATTGAAGAACCAATTGAAGCTTCTTTGAATCGCCACTGCAAGCATTGTCAATATGTTGGTAATGATGGGGCCACCATTTCATTTGCAACAAGAAGTATCATTTCGTATTACCCTCGAAGGAGGCATTGGCTACATGCTCGAGTTGTGAAGGGTGCTGTGATGCTATTGCCACAATCAACAACAACAACAACAACAACAACAGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGCTTGGAAACCGGTTCCAATTTGGCTGGCAACCAGATCATGGACTTTTGGAATCGTTTGTGCATTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACTTCACAGAAAAGAGGCATGGAACTTAGACTTATAAATGGAATAGCATATAGTGAGCCATGGTTCGGTCGTTGGGGCTACAAATTTGGTAGAGGTTCCTTTGGTGTGACACAATCCATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCACTCTACTTGCTGATACACCACATTGGCGCAAATAATTTCAACCACCACGAAGTGCCCGTCATTTTCTCACGCTACCAAACCCTGTCCGGCCAATCGCTAGTCACACTCGGCGACTTATTTCGCTACATGCTCGAGCTAAAGTCGCGCCTCCCGCGGGAGACTCGAGTTATTGGTAACAATAATTATAGTTGTTCCTACAACAACACTAGTAGTACTAGTGCCAGTGCATTGGTTGAGTCCAATAATAATTGCCGTTGGTCACCTAAGAGGATTGAAATGGCAACAAGGGTAATTGTTGAGGCATTGAAGAGAACAGAGTTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGTGACACTGGTTTATTGGATTTTGTGCTAAAGTCACTAGGGAATCATGTTGTTGGGAACTACTTGGTACGTAGGAGCTTAAATCCTGTTACCAAAGTTTTGGAGTATTGCTTAGAAGACATTTCCAATCATGTTTACCATAATTGCAATGAAGGTAGTTTGGCCATCAATAATAGTAATAGTAACAATAATAATAAAATTAAGGATAAGTACAAGATTTCAAGGGCTCAACTTATGAAGGACATGCTTTATTTGTATAAGTACATCCTAATTGACCCTAAACCAATGATGGGGTTGGAGTTTCTCTCAGCCATACCGTTGGCGGCTAGGATAATTCTCGACACCAAGTTTCTCGTCAAAGACTACTCTGGCGAGGTTCCGACTTTTGGAGTTGAGTTAGGCTCGGACGGAAAACTGAACCTTTATTGCACAATTTTGTTGCGGAACAATTCATGCATTGATGAGGAGTTCTTGAGTAAGGCTATGCCACCCTATGAGTGCATCACTTTGGGAAGCAATGCTACAATCAATGAATTGAAGTTAGAAGTTGAGAGGAATTTTAGGGAAATTTATTGGGGATTAAGGGGATTTGTGGTAGAATCAATTGGGAATTTTAGTGCCAATAATATTATTAGTAATAATGGGAAAGATATGGTTTTGGGGCTAATTGAAGTGATGGGTGGGAAAATAGTGTTAGAGGGTTGGATTGGTGAAATAATTGGAATGATGAATAACAACATGATGATTGGCCAAATGTGTGAGAATGATCCAAAGAATGGGATTGTGGAGTGCACTTGTGGAACAAAAGAAGATGATGGAGAGAGGTTGGTGTGTTGTGATATTTGTGAAACTTGGCAGCATACAAGGTGTGTTCGAATTCCAAATGATGAAGAAATTCCTCACATTTTTCTTTGCAAAAGGTGTGAGCAAGAAATTGTTATGTTCCCTTCATTGCCATAA 2082 0.4097 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANSESNLGMGMPMWSFQLEVHHHPPLHIFLFVIEEPIEASLNRHCKHCQYVGNDGATISFATRSIISYYPRRRHWLHARVVKGAVMLLPQSTTTTTTTTGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIGLQARKVSLNDTSQKRGMELRLINGIAYSEPWFGRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIGANNFNHHEVPVIFSRYQTLSGQSLVTLGDLFRYMLELKSRLPRETRVIGNNNYSCSYNNTSSTSASALVESNNNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNHVYHNCNEGSLAINNSNSNNNNKIKDKYKISRAQLMKDMLYLYKYILIDPKPMMGLEFLSAIPLAARIILDTKFLVKDYSGEVPTFGVELGSDGKLNLYCTILLRNNSCIDEEFLSKAMPPYECITLGSNATINELKLEVERNFREIYWGLRGFVVESIGNFSANNIISNNGKDMVLGLIEVMGGKIVLEGWIGEIIGMMNNNMMIGQMCENDPKNGIVECTCGTKEDDGERLVCCDICETWQHTRCVRIPNDEEIPHIFLCKRCEQEIVMFPSLP* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0593 693 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 693 - -
Amo15g0593 693 SUPERFAMILY FYVE/PHD zinc finger 622 685 IPR011011 -
Amo15g0593 693 SMART PHD_3 637 683 IPR001965 -
Amo15g0593 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 687 IPR013083 -
Amo15g0593 693 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 693 - -
Amo15g0593 693 Pfam PHD-finger 638 684 IPR019787 -
Amo15g0593 693 ProSitePatterns Zinc finger PHD-type signature. 638 682 IPR019786 -
Amo15g0593 693 ProSiteProfiles Zinc finger PHD-type profile. 635 685 IPR019787 -
Amo15g0593 693 CDD PHD_MMD1_like 637 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0593 Amo-Chr15 37511685 37518185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0593 10 693 PHD Transcription Factor Family AT5G22260 48.559 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo15g0593 PHD 2.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0593 - - adu:107489498 1249.96