Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0573 ATGGCATCCGAGCCTGACGTTTTCGAAAGATTTGTTAGAAACAGAGATATGACTCTGTTTTTGCCTTTCTTCTTTGGCTTCTCTGATTCTCAATCTCGGGATTCTTCATCGCAAGACCAAGATAACGACGAAACGGGAGAAAGGACCACCGATGCTCCCAACCGAGAGAGGATCATACTAGTGAACCCCTTCACGCAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCCGCAAAGCTGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCGAAGAAGGTGAAGCTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGCAGGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGGAAYAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAGAATCGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTTAACAGGGGTATTAGTAGGAGACATAACGACGATCAGAATCACAATCAGAATCAAAATCAAGATTCTTCTGGTGGTGGTGATGATGATCCTAATTRGGGTGATTATGCATCATCAACTGCTGGAGGTGATGCTGAAGCAGAAAATTAG 759 0.4559 MASEPDVFERFVRNRDMTLFLPFFFGFSDSQSRDSSSQDQDNDETGERTTDAPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSRKAGRPPATKESIDAMPSFVIEEGEAEVGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCRYEMPVEEKDEGNKRDSEGEEEQEGGERERRRIGNGEVWVSFSFNRGISRRHNDDQNHNQNQNQDSSGGGDDDPNXGDYASSTAGGDAEAEN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0573 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Amo15g0573 252 SMART ring_2 120 160 IPR001841 -
Amo15g0573 252 MobiDBLite consensus disorder prediction 171 195 - -
Amo15g0573 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 20 210 - -
Amo15g0573 252 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Amo15g0573 252 MobiDBLite consensus disorder prediction 36 54 - -
Amo15g0573 252 MobiDBLite consensus disorder prediction 171 252 - -
Amo15g0573 252 MobiDBLite consensus disorder prediction 30 54 - -
Amo15g0573 252 Pfam Ring finger domain 119 161 IPR001841 -
Amo15g0573 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 20 210 - -
Amo15g0573 252 CDD RING-H2_PA-TM-RING 119 161 - -
Amo15g0573 252 SUPERFAMILY RING/U-box 104 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0573 Amo-Chr15 36715600 36716840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0573 10 214 C3H Transcription Factor Family AT1G26800 51.707 2.80e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0573 - - adu:107489464 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2783 05 70399287 70400444 Amo15g0573 15 36715600 36716840 hybridization