Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0412 ATGCTACTAAGATCGAGCCAAGACGCCTCCTTCATCAACGCATTTCTAGATCTAATTGCAATGCCCAAACCTTTGAGATCGAGAGAAAGTGCCTCTTCGGTTAACTCTCCTCCGCCAATGATGCTCGTGTTCTCCATCGGCATTCTATTCCTTCTGTATGCTCTTCTTTCCACTCATTCTCAATTTCTGATTCTGAATGCTTTGCTATGTGATATAACATTCGATGAGTTTTATTATCTCTTAATGGATAATATTGTTTCAAGTTCTCAAGAACTCCAAGTATTTGATGAATTATTCCTCAAGGCAAGAAAATTTGATATCGAGAAGACAAAGTACTCGGATCTTATTTGGAGTGAACCAGGAATCAAAGGAACCTTTGATGTGTATGGCAACAGTCCCTCGGTTAAAACTTTTGGTGAATCTGGCCTTCCACCGGTGGGAACACACGTCTTCTACTTCCCTCAAGGACACAGTGAGCAGGTCGCAGCGTCTTTGAAGAAAGATGCTGATCCAGAAACTGATGAAGTTTATGCTCAGATGACACTTCAACATGTACTTTCTGTAAATGAACTTGAGTTGCCATTTTTAGCACTTCTCTTGGTCATTCTTTTCCCTTATGAGGTCATAGGATTTAGGGACGCAAAAGAAGGTGCTATCATTTCATTATTGATTGCAGTGTATTTGGCTTACCAGTATTTTTCAACAACAAGTTTACAGAAATTACTTGATCAAGGTTCAATTATAGTAACCCACCACAGCAACAAGAAATGCGGCCTTAAGATTGCACAGGCTTCACAGCATGCTCTATTTGTCAGGAAAGGGAACCATCTACTCATGTAA 840 0.4012 MLLRSSQDASFINAFLDLIAMPKPLRSRESASSVNSPPPMMLVFSIGILFLLYALLSTHSQFLILNALLCDITFDEFYYLLMDNIVSSSQELQVFDELFLKARKFDIEKTKYSDLIWSEPGIKGTFDVYGNSPSVKTFGESGLPPVGTHVFYFPQGHSEQVAASLKKDADPETDEVYAQMTLQHVLSVNELELPFLALLLVILFPYEVIGFRDAKEGAIISLLIAVYLAYQYFSTTSLQKLLDQGSIIVTHHSNKKCGLKIAQASQHALFVRKGNHLLM* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0412 279 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 190 250 IPR008892 GO:0016021
Amo15g0412 279 Pfam Cold acclimation protein WCOR413 189 247 IPR008892 GO:0016021
Amo15g0412 279 PANTHER COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED 190 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0412 Amo-Chr15 19577573 19583422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0412 143 185 B3 DNA Binding Superfamily AT5G20730 52.239 4.47e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0412 - - aip:110266747 88.1965