Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0407 ATGTATAGCCCAGGATTCAGCTTTATGATCAATGCTTGCATTTTGTTGTCATTGATGTCTTTAATTTCTTCCCTGGAACCCCAACTTGGATCCACCCGCGTTGTCTTTCAGACAAATTATGGGGATATTGAATTTGGTTTCTTTCCCACTGTTGCACCCAAAACTGTTGATCACATCTTTAAGCTTGTCAGACTTGGAGGCTATAACACTAACCATTTCTTTCGGGTGGATAAGGGGTTTGTGGCCCAAGTAGCAGATGTTATGGGTGGAAGATCTGCTCCAATGAATGAGGAACAAAGAAAAGAAGCTGAAAAGACTGTTGTTGGTGAATTTAGCGAAGTCAAACATGTTCGTGGTATTCTTTCTATGGGAAGGTATGATGATCCAGACAGTGGTTCATCCTCATTCTCGATACTACTTGGAAATGCTCCTCATCTCGACGGCACGTATGCAATATTTGGAAGAGTTACTAAAGGTGATGATACATTGAAAAAGCTTGAGCAGCTGCCTACCCGTAAAGAGGGTATATTTGTAATGCCAACAGAACGCATCACGATTCTGTCATCGTATTACTATGACACGGAGACAGAAAATTGTGAGCAAGATAGAACGATATTGAAGCGCAGGTTAGCTGCGTCCGCTGTTGAAGTTGAAAAACAGAGGATGAAATGCTTCCCTTGA 681 0.4185 MYSPGFSFMINACILLSLMSLISSLEPQLGSTRVVFQTNYGDIEFGFFPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVMGGRSAPMNEEQRKEAEKTVVGEFSEVKHVRGILSMGRYDDPDSGSSSFSILLGNAPHLDGTYAIFGRVTKGDDTLKKLEQLPTRKEGIFVMPTERITILSSYYYDTETENCEQDRTILKRRLAASAVEVEKQRMKCFP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0407 226 Gene3D - 22 199 IPR029000 -
Amo15g0407 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Amo15g0407 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Amo15g0407 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Amo15g0407 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Amo15g0407 226 CDD cyclophilin 35 188 - -
Amo15g0407 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Amo15g0407 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 12 226 IPR044233 -
Amo15g0407 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 12 226 - -
Amo15g0407 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Amo15g0407 226 SUPERFAMILY Cyclophilin-like 27 193 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0407 Amo-Chr15 19353372 19364809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0407 34 192 U-box Gene Family AT5G67530 28.144 7.32e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0407 - - gmx:100819238 391.349