Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0368 ATGCAAGATAATATGAAGAAGCAGAAGCAGAAGCAGGTAGTGGTGGTGGCCAATAATGAAGAATCTAATAAGAAGAAGGAGCATCGCATTGTTATGTGGACTCAAGAGGAGGATGATATTCTGAGGGAGCAGGTTGGAATCCATGGAACTGAAAATTGGGGTATTATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGGAGATGGTTCACTTACTTGAATTCTGATTTCAAGAAAGGGGGTTGGTCACCGGAGGAAGATATGCTCTTGTGTGAGGCTCAGAAACTATTTGGTAACCGGTGGACAGAAATATCAAAGGTGGTTCCAGGCAGAACGGATAATGCTGTTAAGAACCGGTTCTCCACATTGCGCAAAAAGAGAGCGAAATATGAAGCATTAGCGAAAGAGAACCACACTTCATACACCAATTCAAATAATAAGAGGGTTATTCTACAACATGGATATGTTACAGATTCAGCATCAGAATCTGGTGTGTCTACTAAGAAGATGAGGAGGTCACATATTCCAGTGGTAGAAGAAAGGATAAACTATGGAGACAGATTACATAAACAAAATGGAAGTCAGATAAGTCAGCAGCCAAGAGCGCCATTCGCCGTACTACCTCAGAACTCTCATAATGTCAACAACTTACCAGATCAGCATGATATCTGCAGTTTGAAGTTTAATGGTTATGGCCAAAACAAGTTGCAAGGGACATTCCTCAAAAAGGACGATCCAAAGATAAACGCATTGATGCAACAAGCAGAGTTCCTAAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTAGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAGACGAACCAAAGAGTCTGATGGTCCGAGATGTAAGGTTCCGGATCTACAGCTTGTAGATCTAGGAGATTGGTTGGAGGAATTGAAGAGTAATAGTGAGAGAATTCAACCATGTTGGAGGAAATTTAAATCCATTCAAAACACAAAGTCCTATGAGGACTATAGTTTCGGATTGTATTCTAGGCAAATGGAATTATATGAAGACTCTCCTGGCAGTTCTGAGTACAGCACAGGATCAACTCTCCTCCCTCATTTGGGTGCCGACAACTCGGAACACTCGCTGCATCAGGAAATTGAAACTGAACTCAAGTCAATACACATTGGAGATCAAAAGGAATGTGAGCAAGGTGTTCTTTCTACTGCAACTTTGGATCAAGATGTTTTCGCATTAAATAAGGATCGGATGAACAAAGATGGCATTGTTTCTGCCTCATCAATGACAGAGTTCAGTTCCCCTCCTCAAGTTACACCTCTGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCTCAATTTTCGGAAAGCGAGAGGAACTTCCTCATGAAAACACTTGGAATGGAATCTCCATCCCTCAACAACATAAGCTTAAACCCCTCGCAACCACCACTCTGCAAAAGAGCCCTGCTACAAAGCCTATAA 1500 0.4167 MQDNMKKQKQKQVVVVANNEESNKKKEHRIVMWTQEEDDILREQVGIHGTENWGIIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEISKVVPGRTDNAVKNRFSTLRKKRAKYEALAKENHTSYTNSNNKRVILQHGYVTDSASESGVSTKKMRRSHIPVVEERINYGDRLHKQNGSQISQQPRAPFAVLPQNSHNVNNLPDQHDICSLKFNGYGQNKLQGTFLKKDDPKINALMQQAEFLSSLALKVDAENMDQSLENAWKVLQEFLRRTKESDGPRCKVPDLQLVDLGDWLEELKSNSERIQPCWRKFKSIQNTKSYEDYSFGLYSRQMELYEDSPGSSEYSTGSTLLPHLGADNSEHSLHQEIETELKSIHIGDQKECEQGVLSTATLDQDVFALNKDRMNKDGIVSASSMTEFSSPPQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNNISLNPSQPPLCKRALLQSL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0368 499 PANTHER MYB PROTEIN-RELATED 11 496 - -
Amo15g0368 499 CDD SANT 33 76 IPR001005 -
Amo15g0368 499 CDD SANT 85 126 IPR001005 -
Amo15g0368 499 Gene3D - 19 81 - -
Amo15g0368 499 Pfam Myb-like DNA-binding domain 33 93 - -
Amo15g0368 499 SMART sant 81 129 IPR001005 -
Amo15g0368 499 SMART sant 29 78 IPR001005 -
Amo15g0368 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Amo15g0368 499 ProSiteProfiles Myb-like domain profile. 33 76 IPR001005 -
Amo15g0368 499 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Amo15g0368 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 76 IPR017930 -
Amo15g0368 499 SUPERFAMILY Homeodomain-like 31 123 IPR009057 -
Amo15g0368 499 Gene3D - 84 154 - -
Amo15g0368 499 PANTHER TRANSCRIPTION FACTOR MYB88 11 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0368 Amo-Chr15 15782731 15788064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0368 1 328 MYB Transcription Factor Family AT2G02820 56.024 8.22e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo15g0368 Myb_DNA-bind_6 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0368 K09422 - gmx:100807667 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0368 15 15782731 15788064 Amo15g0368 15 15782731 15788064 ECH
Amo05g1529 05 25639723 25645585 Amo15g0368 15 15782731 15788064 hybridization
Amo05g1529 05 25639723 25645585 Amo15g0368 15 15782731 15788064 PCT
Amo15g0368 15 15782731 15788064 Amo15g0368 15 15782731 15788064 PCT