Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0323 ATGAAAGGAATATCCTATCGAGGTAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAACCCGCTTGGATCACATATAGACAAATAGAAGCAGGTCGGCGGGTAATGTCACGAAATGTCCGCCGAGGTGGACAAATATGGGTACGGATATTTCCAGACAAACTAGTTACAATAAGACCAACCGAAACGCGTATGGGTTCGGGAAAGGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCAGTAGAATACTTTATGAAATCGGCGGAAACGATATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCAGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAGTATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGACACCATCGCCGACATAATAACCTCTATACGAAATGCTGACATGAATGGAAGAGGAACGGTTCTAATACCATCTACTAACATTACTGAAAACATTGTTAAAATGCTTTTACGAGAGGGTTTTATTGAAAACGTGAGAAAACATAGGGAAGGAGGAAATCTTTTTTTAGTTTTAACTCTACCATATAGAAGAAATAGAAAAGGATCATCTAAAACACGTTTGAATTTAAAACGGATCAGTACTCCTGGTCTACGAATCTATTCTAATTATCAACAAATTCCGAAAATTTTAGGGGGATGGGAATTATTGAGAGGCTCGATTAGAACGAATCGGCGGAGAAATATGGCAAAATCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTATGCGAAGGGGAACACCATTTGTCACCCAAACCGCAGCAGGAAATGTTATTCGAACAGTAGCGAATCAAGGCATGCAACGAGCAGAAGTCATGATAAAGGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACCATAG 1314 0.4087 MKGISYRGNHICFGRYALQALEPAWITYRQIEAGRRVMSRNVRRGGQIWVRIFPDKLVTIRPTETRMGSGKGSPEYWVAVVKPSRILYEIGGNDMIQPQTHLNVADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIDTIADIITSIRNADMNGRGTVLIPSTNITENIVKMLLREGFIENVRKHREGGNLFLVLTLPYRRNRKGSSKTRLNLKRISTPGLRIYSNYQQIPKILGGWELLRGSIRTNRRRNMAKSIPKIGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGMRRGTPFVTQTAAGNVIRTVANQGMQRAEVMIKGPGLGRDAALRAIRRSGIP* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0323 437 SUPERFAMILY Ribosomal protein L16p/L10e 1 103 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 Gene3D Ribosomal protein L14 85 211 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo15g0323 437 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo15g0323 437 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo15g0323 437 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo15g0323 437 Gene3D - 282 314 - -
Amo15g0323 437 Pfam Ribosomal protein S11 350 436 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 ProSitePatterns Ribosomal protein L14 signature. 154 180 IPR019972 -
Amo15g0323 437 SMART Ribosomal_L14_2 95 216 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 Hamap 50S ribosomal protein L14 [rplN]. 95 216 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 Pfam Ribosomal protein L16p/L10e 2 93 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 Gene3D - 212 280 - -
Amo15g0323 437 SUPERFAMILY Ribosomal protein S8 208 310 IPR035987 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 Hamap 30S ribosomal protein S11 [rpsK]. 320 437 IPR001971 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 Gene3D Ribosomal protein S11 334 437 IPR036967 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 SUPERFAMILY Ribosomal protein L14 95 215 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 95 207 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 TIGRFAM rplP_bact: ribosomal protein uL16 1 95 IPR000114 GO:0003735|GO:0006412|GO:0019843
Amo15g0323 437 CDD Ribosomal_L16_L10e 7 95 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 SUPERFAMILY Translational machinery components 345 436 - -
Amo15g0323 437 Pfam Ribosomal protein S8 209 308 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo15g0323 437 TIGRFAM rplN_bact: ribosomal protein uL14 95 213 IPR005745 GO:0003735|GO:0006412|GO:0015934
Amo15g0323 437 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 95 207 - -
Amo15g0323 437 Pfam Ribosomal protein L14p/L23e 95 214 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0323 Amo-Chr15 12519254 12522395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0323 102 215 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.593 3.14e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0323 K02874 - dct:114579343 283.108