Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0318 ATGGCGAGTGGTAAGCTTTATGGGGGTTCCAGCATGTCCCTTCTGCTCCAAAACGAGAGTAGACTTCCCTCTTCATCTCAAGTTCTTGACTCTCTTTGGCTTCACACCTCTGACCCTTCTTCTTTCCAAGGTTCAAAAAACATGGTTGTTGATTTTGAGAATGGAAGAGGAAGCAGCATAAGAGACAGAAGCTTCTTCCAACAAGGGCTAATAGAAAAAGAAGASAATAATAATAACGGGTGTGATGACGATTATGACCCTTCATGCTTCCAACAAACGGGTAGTAACGGTGGTAACAGCAAGAAACGGAGGCTAACGAGCGAGCAGGTTCAGTTCCTGGAACGAAGCTTCGAGATGGAGAACAAGCTCGAACCCGAAAGAAAAGTTCAGCTTGCGAAAGAGCTTGGGTTGCAGCCAAGGCAAGTGGCGATTTGGTTCCAAAACCGAAGGGCAAGGTTCAAGACGAAGCAGCTTGAGAAAGAGTATGGTGCACTGAAAGCTAGCTTTGACAAACTCAAAGGTGACTATGAAAGTCTTCTTCAACAGAATGACAAGTTAAAACAAGAGGTGAATGCTCTTAGGAACAAGTTGATTCCTAGAGATAAAGAGGATGAGAATTGTTCTTCAGATGAAAAATCATCTCCACAGGATGTTGATACAATCAATTCAAACCACAACAAGGAGGAGGATGAGCCTRTTATGATGGAATTGATGATCTCAAATTCAACCTCAAATGAAAATGGATCTAAGATGCCATTGCCACACCCAATCATTTTGACATGCAAGCAAGAAGATGCAAATTCAGCAAAAAGTGATGTCCTCGACGATTCGGCCGATAGTCCACATTGTACTAATAATGGAAACCACCACCACCACCACCACCACCATTTCTCGTCGTTCATGGAGGAGGAGCCGGCTGATTCGGATGATTTCTCGCAGGATGACGATGATAACCTTAGCGAAAACCTATTGACTCTTCCTTGTTTGCCTAAGGTTGAAGATAATGATGCATGCTACCATGAACAAAATGAGAACACTTGTGGTTTTGGTTTTCCAGTAGAAGACCAAACCTTTTGTTTCTGGCCTTACTAA 1092 0.4304 MASGKLYGGSSMSLLLQNESRLPSSSQVLDSLWLHTSDPSSFQGSKNMVVDFENGRGSSIRDRSFFQQGLIEKEXNNNNGCDDDYDPSCFQQTGSNGGNSKKRRLTSEQVQFLERSFEMENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGALKASFDKLKGDYESLLQQNDKLKQEVNALRNKLIPRDKEDENCSSDEKSSPQDVDTINSNHNKEEDEPXMMELMISNSTSNENGSKMPLPHPIILTCKQEDANSAKSDVLDDSADSPHCTNNGNHHHHHHHHFSSFMEEEPADSDDFSQDDDDNLSENLLTLPCLPKVEDNDACYHEQNENTCGFGFPVEDQTFCFWPY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0318 363 Coils Coil 169 196 - -
Amo15g0318 363 SMART HOX_1 99 160 IPR001356 GO:0003677
Amo15g0318 363 MobiDBLite consensus disorder prediction 197 255 - -
Amo15g0318 363 MobiDBLite consensus disorder prediction 76 104 - -
Amo15g0318 363 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 363 - -
Amo15g0318 363 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 363 IPR045224 GO:0003700
Amo15g0318 363 Gene3D - 93 163 - -
Amo15g0318 363 MobiDBLite consensus disorder prediction 197 212 - -
Amo15g0318 363 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Amo15g0318 363 SUPERFAMILY Homeodomain-like 86 158 IPR009057 -
Amo15g0318 363 PRINTS Lambda-repressor HTH signature 136 152 IPR000047 GO:0003677
Amo15g0318 363 PRINTS Lambda-repressor HTH signature 127 136 IPR000047 GO:0003677
Amo15g0318 363 CDD homeodomain 101 157 IPR001356 GO:0003677
Amo15g0318 363 Pfam Homeobox associated leucine zipper 156 197 IPR003106 GO:0006355|GO:0043565
Amo15g0318 363 Pfam Homeodomain 101 154 IPR001356 GO:0003677
Amo15g0318 363 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Amo15g0318 363 MobiDBLite consensus disorder prediction 269 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0318 Amo-Chr15 11914897 11917507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0318 101 230 Homeobox Transcription Factor Family AT3G01470 56.818 3.54e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo15g0318 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0318 - K09338 adu:107489132 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0318 15 11914897 11917507 Amo15g0318 15 11914897 11917507 ECH
Amo05g1621 05 30064923 30067546 Amo15g0318 15 11914897 11917507 hybridization
Amo15g0318 15 11914897 11917507 Amo05g1621 05 30064923 30067546 PCT