Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0249 ATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTACAGGTTTTTCTACAAGAGTTCAGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACTAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCTTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGAAACTAAACATGTCCATCTGTCGTACAATAGAGAATAACGAGGAGGCCGGTATCAGACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGGGGATCTGTATGAAGACCGTCATATATGGGTTCCTATCTATCTGGATCACCACTTTTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCCTTTTTTAACAAGTTTATCACCTGGAACAGCTCGCTTATTCAATTCGTCAAACAATACGATAATTGCCTCGGAAGGAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACAAAGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTATGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAGTTCTGTACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGACTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGATAAACTTGTTTGATGCTGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1470 0.434 MTFTTLEDAGKFYRNYAKATGFSTRVQSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRKLNMSICRTIENNEEAGIRPSKTYQSFVAAAGDLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITWNSSLIQFVKQYDNCLGRREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYKVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDQLVFRSQNICEFASESEELTAVLYRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEINLFDAASVVHSNSSQYQGHVMNYQFRVPAAGDNSLGV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0249 489 ProSiteProfiles Zinc finger SWIM-type profile. 276 312 IPR007527 GO:0008270
Amo15g0249 489 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 140 372 IPR031052 GO:0006355
Amo15g0249 489 SMART 26again6 287 314 IPR006564 GO:0008270
Amo15g0249 489 Pfam SWIM zinc finger 278 309 IPR007527 GO:0008270
Amo15g0249 489 MobiDBLite consensus disorder prediction 395 431 - -
Amo15g0249 489 PANTHER OS03G0843700 PROTEIN 1 108 - -
Amo15g0249 489 PANTHER OS03G0843700 PROTEIN 140 372 - -
Amo15g0249 489 MobiDBLite consensus disorder prediction 402 416 - -
Amo15g0249 489 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
Amo15g0249 489 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 108 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0249 Amo-Chr15 8836913 8847089 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo15g0249 FAR1 3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0249 - - adu:110280503 632.484