Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0225 ATGATGAAGAACACCATGGCTTCTTTTACTCATCAACTCCCTCTTCTGCTTACCTTTGTGGCATCATTTGCATTTGTTCTTACCACAACTAGTGTGTTCTCATCGAAAGTTTCAATGAAAGAAACAATTTTGGAACCTTTCAAGTGCTCCACAAACATAAAAACATGCAATGCCTCACTCTACCACATAACCTACGGTGATAATGATGATGACCAAACCATACAACATTACATATCTTCCAATTACACAAACTCCTCCCAAATCAGACCAATCACACGTGGCACAAGACAAGACCACCTCATAACAGTGCCTTGTTCATGCAGAAACAACAACAACCTCACCGGTTATTACTATGACACAACCTACACTGTGAAGCCAAATGATAATTTCTATGACATTAATAACTTTGTTTACAGTGGTCAAGCGATGCTTATAAATGGTGTTTTGTACCCGGGTCAGAAACTGAGTATTCATATTCCTTGTGGGTGTTCAGAAATTGAGTCACAAATTGTTGTGACTTACACGGTTCAAAGAAATGATACCTCATCTGAAATAGCTAAGCTTTTGAATTCTACGGTTGCTGAGATGGAGAGTGTGAATCATCTTTTGGATCAGAACCCATCATACATAGATGTGGGTTGGGTTTTGTTTGTTCCTAGCCATTTTAATGGAATTCCACTGCCTCCAACAAAAGAAAAGAAACCAAAGTGGCAGATAATCATTGGGGTCTTAGTGAGTGTGACATTACTTTCAGTGATTGCCGTCATCTTTCTCATTCTCAGGAGAAATAGGGATACCGCAGCATCCGCCACAAATAATCCAAAAAGTGTCACTAAAAGATCAATTTCCAAAAAGAACTCTGACATTCATAAAGAATACATGCAAGATGCTACATCATTTGAGTCAGAAAGACCAGTAATTTACTCAATTGAGGAGATAGAAGATGCCACAAATAACTTCGATGAAAACAGAAGAATTGGGGTTGGTGGATATGGCAGTGTATATTTTGGAATGTTAGGCCACAAGGAGGTTGCTGTGAAGAAGATGAAGTCCAATAAATCCAAGGAGTTCTTCGCAGAACTCAAGGCCTTATGTAAGATCCATCACATAAACATTGCTCTATCTTGGTGTGCTAGGACTCAGATTGCATTGGATGCAGCAAAAGGAATTGAATACATACATGATTACACAAAAGCACAATATGTTCACCGTGATATAAAGACTACTAACATTCTTCTTGATCAGAAACTCAGAGCCAAGGTAGCAGATTTTGGCCTTGCAAAACTGGTGGAACGGACAATGATGAAGAATTCATTGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCTGAGTAAGTTACGTTTTTCAATTTCTTTCTCCGAATGGTTATATAAAGATGGTAAACAAGGTGAAAACTTAAGTGCATTCGACTTCACATCTGTGAAAGAATTACAAGTGACCATAAAAACGGATGTGTTTGCATTTGGAGTAGTTCTATCAGAGCTGATAACAGGAAAACGTGCGCTATTTCGTGACAGCCAAAAACCCAATCAAATGGAATCTCTTATTTCACTTGTTAAGAAAATATTCCAAGATAATGATCCCGTCACTGCTTTAGAAAATGTTACAGATATGAATCTTCAACATAACTATCCTATAGACGCTATCTACAAGATGGGAGAAATAGCAGAGTGGTGCATGAGGGAGGAACCAATGGAGAGGCCTGAAATGAAGGAGATAGTTGGCGCGTTGTCACAGATAGTTATGACATCCATCGAGTGGGAAGCATCGCTCGGAGGAGATAGCCAAGTTTTCAGCGGCGTATTTATTGGAAGATAA 1845 0.3919 MMKNTMASFTHQLPLLLTFVASFAFVLTTTSVFSSKVSMKETILEPFKCSTNIKTCNASLYHITYGDNDDDQTIQHYISSNYTNSSQIRPITRGTRQDHLITVPCSCRNNNNLTGYYYDTTYTVKPNDNFYDINNFVYSGQAMLINGVLYPGQKLSIHIPCGCSEIESQIVVTYTVQRNDTSSEIAKLLNSTVAEMESVNHLLDQNPSYIDVGWVLFVPSHFNGIPLPPTKEKKPKWQIIIGVLVSVTLLSVIAVIFLILRRNRDTAASATNNPKSVTKRSISKKNSDIHKEYMQDATSFESERPVIYSIEEIEDATNNFDENRRIGVGGYGSVYFGMLGHKEVAVKKMKSNKSKEFFAELKALCKIHHINIALSWCARTQIALDAAKGIEYIHDYTKAQYVHRDIKTTNILLDQKLRAKVADFGLAKLVERTMMKNSLQQGLLEHQATFHLSKLRFSISFSEWLYKDGKQGENLSAFDFTSVKELQVTIKTDVFAFGVVLSELITGKRALFRDSQKPNQMESLISLVKKIFQDNDPVTALENVTDMNLQHNYPIDAIYKMGEIAEWCMREEPMERPEMKEIVGALSQIVMTSIEWEASLGGDSQVFSGVFIGR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0225 614 CDD LysM 172 218 IPR018392 -
Amo15g0225 614 ProSiteProfiles LysM domain profile. 172 218 IPR018392 -
Amo15g0225 614 SMART LysM_2 173 219 IPR018392 -
Amo15g0225 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Amo15g0225 614 Gene3D Transferase(Phosphotransferase) domain 1 378 600 - -
Amo15g0225 614 ProSiteProfiles Protein kinase domain profile. 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g0225 614 SMART serkin_6 320 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g0225 614 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 373 614 - -
Amo15g0225 614 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 27 372 - -
Amo15g0225 614 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Amo15g0225 614 SUPERFAMILY Protein kinase-like (PK-like) 303 586 IPR011009 -
Amo15g0225 614 Pfam Protein tyrosine and serine/threonine kinase 482 585 IPR001245 GO:0004672|GO:0006468
Amo15g0225 614 Pfam LysM domain 174 219 IPR018392 -
Amo15g0225 614 Pfam Protein kinase domain 380 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g0225 614 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 373 614 IPR044812 GO:0019199|GO:0045087
Amo15g0225 614 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 27 372 IPR044812 GO:0019199|GO:0045087
Amo15g0225 614 Gene3D LysM domain 163 223 IPR036779 -
Amo15g0225 614 Gene3D Phosphorylase Kinase; domain 1 278 377 - -
Amo15g0225 614 SUPERFAMILY LysM domain 172 219 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0225 Amo-Chr15 8093837 8098494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0225 300 614 Receptor kinase-like Gene Family AT1G51940 39.335 3.20e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo15g0225 PK_Tyr_Ser-Thr 8.1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0225 - - gmx:100800907 681.404