Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0204 ATGCCTCTTCTACTCTCAGCTTCACAACCTCCCCTACTCCCTCTCATCCCACACAGTAATAAAACTCTCATCACACTTCCTAGAAAGCGCTTTGGTTTCGCTCCCAACACCTTAACAACCCCACCCTCTCTTCGTTCCAGGCGCATTCTCCCTAAATCTTCTGCTTCTTCCTCTTCTTCCATCAACGGTGTTTCCCTTGAGGACATTCCAGAACATTCCAGAAACGAAGAATCAACTTCTCCTACTCGGGATGAGTTCCTTCTCCTCCAAACGCTCCGAACCTGGCTCCGCTTCCTCCCTTCCATTCTCCCCGGTGGATCCTGGTGGAACTTCGACGACGACATCGAAATCGAGCTACTGGCTCAGCCGGTTTCTGTCTGGCGCGCACTCGGCAAGATGTGGCACCTCGTCGCGCGTGACCGCTGGATCATCTTCGCCGCCTTCACCGCTCTCATTTTCGCGGCGGTGTCTGAGATTTCGATACCGCATTTCTTGACGGCGTCGATTTTCACGGCGCAGAGCGCGGAGATTGCGGTTTTTCACCAGAATGTGCGGCTTTTGGTTCTGTTGTGTGTGATCTCGGGAATATGCAGTGGGATAAGAGGCTGCTGTTTTGGCATTGCAAACATGATTTTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTATTCTTCAGGATATATCATTTTTTGACTCTGAAACAGTTGGTGATTTGACAAGTAGACTCGGGGCAGATTGTCAACAAGTGTCTAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGGACAGGTTCATTAATCTACTTGGTGATTTTGTCTTGGCCACTTGGTTTATGTACGTTGATGATATGCATCATGTTAGGAGCAGTTATGGTACATTATGGAAGGTACCAGAAAAAGGCAGCAAGGCTGATCCAAGAAGTCACTGCTTCTGCAAATGATGTAGCTCAAGAGACCTTATCTCTCATTCGAACTGTCCGTGTTTATGGAACAGAAGAAGTAGAACATGGAAGGTACAAATGGTGGCTGGAGAAATTAGCTGACATAAGCCTGCGACAAAGTGCTGCATATGGGTTTTGGAATTTAAGCTTCAATGCTCTTTATCATTCAACTCAGGTTATCGCTGTGCTGTTTGGAGGGATGTCTATTCTTGCTGGACATATTACTGCTGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTAATTTATTCAACCTGGTGGGTGGGAGACAATATTTCCAATTTGATGCAATCTGTTGGAGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTTACCTAGCAGCCAATTCACAGAAAGAGGAGTAAAGTTGCAGGGGTTGATGGGGCAAATCGAGTTTCTAAATGTATCTTTTCGCTACCCTTCAAGGCCAACGGTATCTGTGGTGCAACATGTAAACTTTGTGGTCCATCCCAGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGCGGAAAAAGCACACTGGTGAACCTTTTGCTTCGTCTCTATGAGCCGACAAGTGGCCAGATTTTGGTAGATGGCATTCCTATTAAAGACTTCGACATCATGTGGTGGAGAGGGAGAATAGGATATGTTGGACAGGAACCCAAGCTTTTCCGGATGGATATTAGTTCAAACATCAGATATGGTTGTACTCGCGATGTAACACAGGAAGATGTTGAATGGGCTGCAAAGGAGGCCTATGCTCATGATTTCATCACAGCACTTCCTAACGGTTATGAAACAGTTGTTGACGACGATCTATTAAGTGGGGGTCAAAAGCAGCGAATCGCTATTGCTAGAGCCATCCTTCGGGACCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAACGTTAAGGGTGTTCTTCGATCCGTCAGAAGTGACTCTACATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCCACCATACAAGCCGCTGACAGGATTGTGGTAATGGATGGTGGTCAAGTTGTTGAGATTGGAAGTCATAGAGAACTTCTCCTAAAAGATGGTTTATATGCTCGGTTGACTCGAAAACAGGCAGATGCCATGGCATGA 2118 0.4542 MPLLLSASQPPLLPLIPHSNKTLITLPRKRFGFAPNTLTTPPSLRSRRILPKSSASSSSSINGVSLEDIPEHSRNEESTSPTRDEFLLLQTLRTWLRFLPSILPGGSWWNFDDDIEIELLAQPVSVWRALGKMWHLVARDRWIIFAAFTALIFAAVSEISIPHFLTASIFTAQSAEIAVFHQNVRLLVLLCVISGICSGIRGCCFGIANMILVKRMRETLYSSLILQDISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGSLIYLVILSWPLGLCTLMICIMLGAVMVHYGRYQKKAARLIQEVTASANDVAQETLSLIRTVRVYGTEEVEHGRYKWWLEKLADISLRQSAAYGFWNLSFNALYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLLPSSQFTERGVKLQGLMGQIEFLNVSFRYPSRPTVSVVQHVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILVDGIPIKDFDIMWWRGRIGYVGQEPKLFRMDISSNIRYGCTRDVTQEDVEWAAKEAYAHDFITALPNGYETVVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSTSRRSVIVIAHRLSTIQAADRIVVMDGGQVVEIGSHRELLLKDGLYARLTRKQADAMA* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0204 705 Gene3D - 458 701 IPR027417 -
Amo15g0204 705 SUPERFAMILY ABC transporter transmembrane region 132 442 IPR036640 GO:0005524|GO:0016021
Amo15g0204 705 MobiDBLite consensus disorder prediction 37 66 - -
Amo15g0204 705 SMART AAA_5 487 676 IPR003593 -
Amo15g0204 705 Gene3D ABC transporter type 1, transmembrane domain 291 457 IPR036640 GO:0005524|GO:0016021
Amo15g0204 705 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 84 704 - -
Amo15g0204 705 Pfam ABC transporter 479 626 IPR003439 GO:0005524
Amo15g0204 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 699 IPR003439 GO:0005524
Amo15g0204 705 CDD ABC_6TM_TAP 147 434 - -
Amo15g0204 705 Gene3D ABC transporter type 1, transmembrane domain 115 290 IPR036640 GO:0005524|GO:0016021
Amo15g0204 705 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 426 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo15g0204 705 PANTHER ABC TRANSPORTER B FAMILY 84 704 - -
Amo15g0204 705 Pfam ABC transporter transmembrane region 144 411 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo15g0204 705 ProSitePatterns ABC transporters family signature. 598 612 IPR017871 GO:0005524
Amo15g0204 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 700 IPR027417 -
Amo15g0204 705 MobiDBLite consensus disorder prediction 37 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0204 Amo-Chr15 7431008 7437281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0204 215 703 Calmodulin-binding Proteins AT2G36910 34.331 2.41e-70 248