Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0185 ATGTCAGAACAGATGCACAAATTTGATCCAGGAAGTCAGCAGTTTGAATTCTCAGAAAATACAAATCAGATTGGTTCTTCATGTTTAGAAAGTGAACAAAAGGTGCTAATCACTATGAAGAATAGGACTGTCTTTGATGAAAAGTTACATCAAGGTTCTGATAATATGAGAGGGAATTCTCTTATTCAACTATCTGCTCCTCCTCAATATGTTTTGGTAAAGAGTTCTCAGATTGGAGAAGGTTCTTGCGACAAAAAAGTTACCGTCGGGCCAGAACTGGCCTTTCGAGATTTATCCGATTATAACTTACAAAGGAAATCTCAACCAGCCTCCCAAAATGTTCAAAATGGATCCGTAGAATCAACTAACTCAATAAGTAGCCTTTTTGTTCAGGATCAAATGCAGCCGAGTCCTGCACAAGAGAACATGAGCTCAGTGATTGAACACTTGGACCTGCCTACTGGGGATGTTGCAGGAAATGATGGTCCTAACTGTTTGCAAAGAAAGTCTAAAAGGCTGACTCAAATGAGGTTAAAGTCGGAGGACGGCAGAACTCCAAAATTACTCAAGGGAAAATATACACTCAGGTCTTCGAGAAGCAGTGACAGAGCTTTGCAGTCGCAGACTCGAGAAAAATGTAAAGTGCCTGAACTAAGTAGCGACTTGATTGATGTTAAAAATGTTGGAGAGAAAAAGAGAAGAGGGAGGAAGAGAAAACAGTGGGGAGGAGAGGGGATTATTGATGAATTTTCAAGAATAAGGAGTCACTTACGATATTTATTGAACAGAGTAAGCTATGAGCAGAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGCATTGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGAGCTAAGTCTGAAATTCTTAGGAGAAAATTGAAAATCAGGGATCTATTTTGGAATTTGGGTTTATTGTGTGCTGAAGGAAAGCTTCCAGAGTCTTTGTTTGATTCGGAAGGAGCAATACGCAGTGACGATATTTTCTGTGCAAAATGCGGGTCCAAAGAGCTGACCACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAATGCTGTTTAAATCCTCCATTGTTAACTAAAGACATTCCGCCGGGCCATGATATTTGGCTATGCCCAGGATGTAACTGCAAACTTGAATGCATTAAACTTCTTAATGACTTCTTAGGAACAAGTCTTTCTATTAGGGACACCTGGGAGCGGGTTTTTCCTGAAGCAACAGAGGCTGCTGGAACTAATGCGGGCCATAACCTGGGACTTCCTTCAGTTGATTCTGATGACAACGATTACAAGCCTAAAGCTCCGGAAGATGAAGAGGTTGAAGGTGGAGAATCAAGCTCTGATGGATCTGATTATGCTTCTGATTCTGAGAAATTGAAAGATTTGCATTCAGAGGATGATGATTATGATCCAAATGCTCCAGATACTGATAGGGGAGCCTCTGAAGAAAATTCAAGCTCTGGTTTCATATCTGATGACACTGTGGACGAAGCTCAAATGCTTGCACCACAGGATGATATTATGAAGTGTAAAAGCTCTCGCAGTAAAAAGTTCAAAGTTGGTTAG 1617 0.4082 MSEQMHKFDPGSQQFEFSENTNQIGSSCLESEQKVLITMKNRTVFDEKLHQGSDNMRGNSLIQLSAPPQYVLVKSSQIGEGSCDKKVTVGPELAFRDLSDYNLQRKSQPASQNVQNGSVESTNSISSLFVQDQMQPSPAQENMSSVIEHLDLPTGDVAGNDGPNCLQRKSKRLTQMRLKSEDGRTPKLLKGKYTLRSSRSSDRALQSQTREKCKVPELSSDLIDVKNVGEKKRRGRKRKQWGGEGIIDEFSRIRSHLRYLLNRVSYEQSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFWNLGLLCAEGKLPESLFDSEGAIRSDDIFCAKCGSKELTTDNDIILCDGACDRGFHQCCLNPPLLTKDIPPGHDIWLCPGCNCKLECIKLLNDFLGTSLSIRDTWERVFPEATEAAGTNAGHNLGLPSVDSDDNDYKPKAPEDEEVEGGESSSDGSDYASDSEKLKDLHSEDDDYDPNAPDTDRGASEENSSSGFISDDTVDEAQMLAPQDDIMKCKSSRSKKFKVG* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0185 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 397 IPR013083 -
Amo15g0185 538 MobiDBLite consensus disorder prediction 443 457 - -
Amo15g0185 538 MobiDBLite consensus disorder prediction 174 189 - -
Amo15g0185 538 SUPERFAMILY FYVE/PHD zinc finger 333 400 IPR011011 -
Amo15g0185 538 MobiDBLite consensus disorder prediction 154 211 - -
Amo15g0185 538 ProSitePatterns Zinc finger PHD-type signature. 341 392 IPR019786 -
Amo15g0185 538 PANTHER HOMEOBOX PROTEIN HAT3.1 126 510 - -
Amo15g0185 538 SMART PHD_3 340 393 IPR001965 -
Amo15g0185 538 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 126 510 - -
Amo15g0185 538 MobiDBLite consensus disorder prediction 495 510 - -
Amo15g0185 538 Pfam PHD-finger 340 395 IPR019787 -
Amo15g0185 538 MobiDBLite consensus disorder prediction 468 494 - -
Amo15g0185 538 CDD PHD_PRHA_like 340 392 IPR045876 -
Amo15g0185 538 MobiDBLite consensus disorder prediction 425 538 - -
Amo15g0185 538 ProSiteProfiles Zinc finger PHD-type profile. 338 395 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0185 Amo-Chr15 6982264 6994214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0185 248 476 Homeobox Transcription Factor Family AT3G19510 59.504 9.59e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo15g0185 PHD 3.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0185 - - adu:107488674 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0185 15 6982264 6994214 Amo15g0185 15 6982264 6994214 ECH