Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0180 ATGGCTAACCAGCAACAACAACCTCTTCTAAGCAATAATAATAAGACTCCGAAATTCCTATCCCTTCTCCTCACTACTGTAGTAGTTGTAGTTGTAGTTGGAATTGGTGTCCTTGCCTCATCATCCCTTATTGCTAATTCATATCTCAGCACCAAACCCAGTGCCGATCTCTGTCAACACGCCGTTAACAGAGCAACCTGCTTGGCCCATGTCTCCGAAATAACTCAAGGTCACATCCTGGCAACCACAGAAGACAACTACAATCTTCTCCAATCCTTCCTTGTCAAATCCACCTCAGGCATCCAAGAAGCCATGGCCACAGCCAACGCCGTCAAGGTCCGCCTCAACGCCACTCCACGCCAGGAAGCAGCCTTGCAAGTCTGTGCAGACCTCATGGACTTGTCCATTTCCAGAGTCTATGACTCCGTGGTGGCTCTCACTAAGCGCACCACTCTTTCCCTGCAAGACGCGCACACGTGGCTGAGCAGCGTCCTCACGAACCATGCCACTTGCTTGGATGGCTTAGATGGCTCTGCTCGTGCCATTATGGAGCCTCAACTCTCGGACCTCATGTCCAGGGCAAGAACCTCTCTCGCCATGTTTGTTGCAGTCTTGCCAACAAAGACCCATCAGCACCAACTCCTTGAGGAGCCACTCAACCGAGAGTTTCCCTCATGGGTCACACGCACCGATCGGAGGCTTTTGGAGTCTGTGGCTGCTGATATAAAGGCTAATGTTGTGGTGGCCAAGGATGGAAGCGGCAAGTTCAAGACGGTGGCGGAGGCTGTGGCTTCTGCACCTGATAACGGTAAAACAAGGTACGTAATATATGTGAAGAAGGGAACGTACAAAGAGAATGTTGAGATCGGTTCAAAGAAGAAGAACGTCATGCTTGTTGGTGACGGTATGGATGCAACAATTATCACCGGCAGCTTGAACTTTGTCGATGGAACTGGCACCTTCCAATCCGCCACCGTCGCCGCCGTTGGTGATGGGTTTATAGGGCAAGACATTTGGTTTCAAAACACGGCAGGGCCAGAGAAGCACCAGGCGGTGGCACTCCGTGTGGGCGCCGACACCTCCGTGATCAACCGGTGCCGCATCGATGCCTACCAGGACACTCTGTACACCCACAGCAACAGGCAGTTCTACCGTGATTGCGTCATCACTGGCACTATCGACTTCATCTTTGGAAATGCTGCTGTTGTGTTCCAGAATTGCAACCTGGTGGCCCGAAAGCCCATGAGCAACCAAAAGAACATGGTGACGGCCCAAGGACGCGAAGACCCCAACCAAAACACAGGGACCTCCATTCAGCAGTGCAAAATAACAGCGAGTTCGGATCTGAAGCCCGTGGTGGGGTCCATCAAGACTTATCTGGGGCGGCCATGGAAGAAGTATTCAAGAACGGTTGTGATGCAATCTTCAATAGATGGGCATATTGACCCCGCAGGATGGTCTGAATGGGATGATAAGACAAAGGACTATTTGGAAACGCTGTATTATGGAGAGTATATGAACAGTGGTGCTGGTGCTGGCACCAGCAAGAGGGTTACGTGGCCTGGTTACCACATCATCACCAGTGCCGCAGAGGCTAGCAAGTTCACAGTGGCTCAGCTAATCCAAGGCGATGTTTGGTTGAAGAACACCGGTGTTAACTTCATTACAGGCCTCTAG 1677 0.514 MANQQQQPLLSNNNKTPKFLSLLLTTVVVVVVVGIGVLASSSLIANSYLSTKPSADLCQHAVNRATCLAHVSEITQGHILATTEDNYNLLQSFLVKSTSGIQEAMATANAVKVRLNATPRQEAALQVCADLMDLSISRVYDSVVALTKRTTLSLQDAHTWLSSVLTNHATCLDGLDGSARAIMEPQLSDLMSRARTSLAMFVAVLPTKTHQHQLLEEPLNREFPSWVTRTDRRLLESVAADIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGSKKKNVMLVGDGMDATIITGSLNFVDGTGTFQSATVAAVGDGFIGQDIWFQNTAGPEKHQAVALRVGADTSVINRCRIDAYQDTLYTHSNRQFYRDCVITGTIDFIFGNAAVVFQNCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCKITASSDLKPVVGSIKTYLGRPWKKYSRTVVMQSSIDGHIDPAGWSEWDDKTKDYLETLYYGEYMNSGAGAGTSKRVTWPGYHIITSAAEASKFTVAQLIQGDVWLKNTGVNFITGL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0180 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 205 IPR035513 -
Amo15g0180 558 PANTHER PECTINESTERASE 28 556 - -
Amo15g0180 558 SMART PMEI_2 49 200 IPR006501 GO:0004857
Amo15g0180 558 PANTHER PECTINESTERASE 28 556 - -
Amo15g0180 558 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Amo15g0180 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 199 IPR035513 -
Amo15g0180 558 Pfam Pectinesterase 245 544 IPR000070 GO:0030599|GO:0042545
Amo15g0180 558 CDD PMEI-like_4 58 204 - -
Amo15g0180 558 Pfam Plant invertase/pectin methylesterase inhibitor 56 192 IPR006501 GO:0004857
Amo15g0180 558 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 182 IPR006501 GO:0004857
Amo15g0180 558 ProSitePatterns Pectinesterase signature 1. 270 289 IPR018040 -
Amo15g0180 558 Gene3D - 238 558 IPR012334 -
Amo15g0180 558 SUPERFAMILY Pectin lyase-like 242 557 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0180 Amo-Chr15 6857156 6860295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0180 7 554 Carbohydrate Esterase AT1G11580 56.351 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0180 K01051 - gmx:100815836 801.586