Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0177 ATGAAAATAATATATATATATATATATATATATATATATATATATAATATATATATATATATATATATATATATATTCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCATGTGACTAGGAACCGAATGTCGAAAAGCCGGAAGCAGAAGGGATCTCAAAAATGGTTTGCAAGTGGGAGCATGTGGCTAAGTGGTGGTTCGTTGGCTCCCGAGGATACAGAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTGAAAAGGATCAGAGTCGATGTGCATTGTGTGGAGAAGGCTTCGATGAGTTTTACAGCGACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACTTTGGCCTCCCTGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTTTGACTCTACTATGTCCTCAATCAATAGGGAACCTACCAAGAGAGTAGTAAGTGAAAAAGAATGCGGGTCAACCAAACATCCGTTTTGTGCACCCTTAATTAGGACTTACTAA 573 0.4031 MKIIYIYIYIYIYIYNIYIYIYIYIFCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGGSLAPEDTEEMKDEEELGVPAEKDQSRCALCGEGFDEFYSDEMDEWMYRGATYLKAPMGTTLASLDRHQLGPIVHSKCRSDFDSTMSSINREPTKRVVSEKECGSTKHPFCAPLIRTY* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0177 190 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 26 153 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo15g0177 190 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 26 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0177 Amo-Chr15 6782921 6785014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0177 27 153 C2H2 Transcription Factor Family AT4G04885 59.124 5.67e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo15g0177 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0177 K14400 - ahf:112721559 266.929