Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0176 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTAGTCCGCCGGTTTAACGCCTTACTTCCCCAGTGCCAAGGCTACCTCAAGGCCGAAGAAATTGTTTGGACGTATGGGCTATTGTTGTCAGAGCTCACCTCCAATGTGAACTCCATCATTAGCGATTTCACTATCATTGCCGGCCAACAGAGGAAACACGCCAAGGGCATCGCGGATGCCATTTGCAATCGGATTCTTGAGGTGCCTGCTGATAAAAAAATTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTTCCTCCCTCTGTCCTAAGTAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCTCATGTTATTAAACCACAATCTTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAAGTTGGATTCAACGGAAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCGTGAAATTCTTAGTACTAAGCTTTTGTTGGTGGAGCAGCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAATACAAACAGTAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTTAATATGGGGGCTGCTCTCCCTGCTGTCAATGCTCATGCTACTTGCCCTTCCGACTTGAATCCAGCATTTTCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTTTGTTTATACATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGTGCCTTAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTACATTTACATGGGGGAACCTTGCCACTTTTACATCCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCGGTGACAAGTCAACCACCACCTGCATATCTTAATTTGATTAGTTCACTAGTGAACCATGGTGTGATCTCGGTAATTAATCCCCCCACCAATCCACCCACCGGACTGGATTCCATTGGGACAGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCGAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAAGAATCGATTCCAGGGTCGTTGGCTCCCGAGGATACAGAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAAAGTCGATGTGCACTGTGTGGAGAGGGCTTCGATGAGTTCTACAGCGACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAATAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAACATGGTAGAGTTGCGCTAG 2127 0.4457 MANGITHEPSPSMLVRRFNALLPQCQGYLKAEEIVWTYGLLLSELTSNVNSIISDFTIIAGQQRKHAKGIADAICNRILEVPADKKIPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVIKPQSLQQMEHSSSIMDNVGGDKLDSTETVGNTREGGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQQRQSPRALIEAYGCDKGREILSTKLLLVEQPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCNTNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAALPAVNAHATCPSDLNPAFSLQKRPRSLFEPINVNNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGALISTPISNPLPDMQGQSLHLHGGTLPLLHPSLPTAPSQMMSHPHADASVTSQPPPAYLNLISSLVNHGVISVINPPTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPGSLAPEDTEEMKDEEELGVPAEEDQSRCALCGEGFDEFYSDEMDEWMYRGATYLKAPMGITLATMDRHQLGPIVHSKCRSDSDSTMPSTNMVELR* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0176 708 ProSitePatterns Zinc finger C2H2 type domain signature. 555 575 IPR013087 -
Amo15g0176 708 MobiDBLite consensus disorder prediction 605 636 - -
Amo15g0176 708 Gene3D - 26 157 IPR008942 -
Amo15g0176 708 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 696 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo15g0176 708 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 696 - -
Amo15g0176 708 Pfam CID domain 50 148 IPR006569 -
Amo15g0176 708 SMART 558neu5 33 155 IPR006569 -
Amo15g0176 708 CDD CID_Pcf11 42 156 - -
Amo15g0176 708 ProSiteProfiles CID domain profile. 30 158 IPR006569 -
Amo15g0176 708 SUPERFAMILY ENTH/VHS domain 33 156 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0176 Amo-Chr15 6772621 6776200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0176 462 696 C2H2 Transcription Factor Family AT4G04885 56.017 6.41e-79 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo15g0176 CID 1e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0176 K14400 - aip:107640327 662.914