Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0159 AACCCACCTCTCTTCCGTCACGCCCGCATTTTTCCCGTCGCGAGTCTCCCTCTCATCCCCCGGCAGCCCTGGTCGAGGCCGGCCATTGTCGTTCCGGTCGCGCGTTCTGGTGAGTGGCTCGCCTCTCTCTCCCGTGCCGAAGATGATGATGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGATGTGAGCAAGCACAGAAGGTGTAACCACATATTCCATCTTAGTTGCATTCAGCAATGGATAGAGCGAAATCAATTCTCATGCCCACTTTGTAGGGGTGAGCACGGGTAG 303 0.5446 NPPLFRHARIFPVASLPLIPRQPWSRPAIVVPVARSGEWLASLSRAEDDDETCSICLVEFEDEDDVSKHRRCNHIFHLSCIQQWIERNQFSCPLCRGEHG* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0159 100 ProSiteProfiles Zinc finger RING-type profile. 53 96 IPR001841 -
Amo15g0159 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 99 IPR013083 -
Amo15g0159 100 SUPERFAMILY RING/U-box 45 98 - -
Amo15g0159 100 ProSitePatterns Zinc finger C2H2 type domain signature. 53 74 IPR013087 -
Amo15g0159 100 SMART ring_2 53 95 IPR001841 -
Amo15g0159 100 Pfam Ring finger domain 52 96 IPR001841 -
Amo15g0159 100 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 32 97 - -
Amo15g0159 100 PANTHER RING ZINC FINGER PROTEIN-RELATED 32 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0159 Amo-Chr15 5873456 5874295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0159 45 97 C3H Transcription Factor Family AT4G38140 47.170 1.74e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0159 - - cqi:110737436 87.0409