Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0157 ATGTCAATGGTGGTGACAGTGAGATGCGGACACTGCACAAGCCTTCTCTCTGTGAATATGATGAAAGCTTCTTTTGTCCCTTTACACCTCTTAGCTTCTCTTTCTACTCATCATCATCATCATTCAAAAGAAGAGGATGCAAACAACATCGCAACTAACAGTTCTTCATCCATAATGATGATGAACTACTCTTCTAATGATTGTGCAGAAGAGGATGTAACCACAATCAACAATGTTGTCAACAAACCACCGGAGAAAAGACAGCGAACTCCATCAGCTTATAACCGATTCATCAAAGAAGAGATTAAAAGGCTAAAGGCAGAAAACCCTGAAATGGCACACAAGGAGGCTTTCAGTACTGCTGCCAAAAATTGGGCCAATTTTCCACCAACTCAGTTAAACGGAGATGAAGAAATTTGCAATCAGAAAGAGCAATTTGCGGATCTGGACTCCCAAGTGGACCGTCATTCTCATTCTCATGAGAGCATCAACGAAGAAGGTGAAGGTTTCCATGGAAGAAAGATGCAAAGAAATTCCATCATGGCAAGGACACAACTTGAATGA 564 0.4131 MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSTHHHHHSKEEDANNIATNSSSSIMMMNYSSNDCAEEDVTTINNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPTQLNGDEEICNQKEQFADLDSQVDRHSHSHESINEEGEGFHGRKMQRNSIMARTQLE* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0157 187 MobiDBLite consensus disorder prediction 158 173 - -
Amo15g0157 187 PANTHER AXIAL REGULATOR YABBY 4 1 152 - -
Amo15g0157 187 Pfam YABBY protein 1 132 IPR006780 GO:0007275
Amo15g0157 187 Gene3D High mobility group box domain 77 168 IPR036910 -
Amo15g0157 187 PANTHER PROTEIN YABBY 6-RELATED 1 152 IPR006780 GO:0007275
Amo15g0157 187 MobiDBLite consensus disorder prediction 158 187 - -
Amo15g0157 187 SUPERFAMILY HMG-box 77 131 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0157 Amo-Chr15 5803226 5805860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0157 1 187 C2C2-YABBY Transcription Factor Family AT1G23420 51.485 3.59e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo15g0157 YABBY 7.2e-48 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0157 K25796 - gmx:100806755 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0157 15 5803226 5805860 Amo15g0157 15 5803226 5805860 ECH
Amo05g1960 05 42430401 42432777 Amo15g0157 15 5803226 5805860 hybridization