Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0130 ATGGAATTTGACGAGCAAGAAGAGCAAGAGGAGGAACTGGGAATACCTGAGGCACCGCAGCCGCAAGCCACGCAAGCGTGTTACGACTCACTCGGAAACTCAGCGAAACTCACTGGGGATGGAACCGCCGCGTCAGGCTTTGGACGAAAAGGAGCAGCAGCGTCGTCGGTGAGGTACCGTGAATGTCAGAAGAACCACGCCGTCAGCTTCGGCGGCCACGCCGTAGACGGTTGCTGCGAGTTCATGGCCGCCGGAGAGGACGGCTCGCTGGAGGCCGTCATCTGCGCTGCCTGCAACTGCCACCGCAACTTTCACCGCAAAGAGATCGACGGCGACATAAGAGGTGGAAGCGGCGCCGGGACCTTACACCACCACCGTCCTCAACCTCCTCCGCCGCATCTCCACCAATTCTCCCCTTACTACCACCACCGCGGTCCGCCGTACCCGGCAGGGTACCTTCACCACCTTGCAACACCTCCGATGGCTCAGCACCGTCCTCTAGCACTTCCTGCAGCGGTTTCCGGCGGTGGACTAAGCAGAGATGAGGAGGACATGTCGAACCCTAGCAGCAGCGGTGGCGGCGGCGGAGGCGGAGGTGGCGGTTGCGGAAGCGGTTCTTCAAAGAAAAGGTTCAGGACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTTGCTTTCGCTGAACAAGTTGGATGGCGGATCCAGAAGCAAGATGAAGCCATGGTTGAACAGTTCTGTGCCGAAGCTTGCGTTAAGAGGAGCGTTCTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGTGACTGGTGAGAGTGGTGGTGTGAAAAGCGAGAAAGCAAATGGAAGAACAAATTAA 858 0.5723 MEFDEQEEQEEELGIPEAPQPQATQACYDSLGNSAKLTGDGTAASGFGRKGAAASSVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGSLEAVICAACNCHRNFHRKEIDGDIRGGSGAGTLHHHRPQPPPPHLHQFSPYYHHRGPPYPAGYLHHLATPPMAQHRPLALPAAVSGGGLSRDEEDMSNPSSSGGGGGGGGGGCGSGSSKKRFRTKFTQEQKDKMLAFAEQVGWRIQKQDEAMVEQFCAEACVKRSVLKVWMHNNKNTLVTGESGGVKSEKANGRTN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0130 285 SUPERFAMILY Homeodomain-like 195 266 IPR009057 -
Amo15g0130 285 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Amo15g0130 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 267 - -
Amo15g0130 285 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 267 - -
Amo15g0130 285 Gene3D - 196 269 - -
Amo15g0130 285 MobiDBLite consensus disorder prediction 171 210 - -
Amo15g0130 285 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Amo15g0130 285 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 208 265 IPR006455 -
Amo15g0130 285 MobiDBLite consensus disorder prediction 1 29 - -
Amo15g0130 285 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0130 Amo-Chr15 4751896 4754219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0130 1 267 ZF-HD Transcription Factor Family AT4G24660 48.134 1.68e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo15g0130 ZF-HD_dimer 8.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0130 - - ahf:112703242 529.25