Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0106 ATGCGAGATACTGAGAAAAAGTTAAATAAGAGAGGATTTAGAAAATCTAGTCACTCAAGGAAACATACTGATTCAAAGCTTGATTTATCACCGAGATTCGAAACAAGTAGTACAAAAGGCCAAGGGAAGAAGCAGAAATTGAAATCGAAACCTCACAAACTCGTTGTTTGCACAGCCACATCAAGGGGCACAGCTACTGATTCTTCTTCCATCAAGGGGTCAATCAAAGATGCTTCAAGTGAAAAATTGATTGTTGGACAAAATATGCATTACAATGATGGGAAATCTTTGCAGATGCTCTCTTCGACAAAGCAACCGGGGGAGAAAATTTCTTTTGGTCCTATTGTCGACGGGAACGATGCTGATGGGGAAGTGAATATTCAAAAAGTTAAGAGAAGGAGAAGGAGGAAAAGGCGAAGGGATAATGTGGATCTTGATGATGCTTTGCGCCTGCAGAGGAGAACAAGGTATCTGTTAATCAAAATGAAGGTAGAGCAGAACCTTATAGATGCATACTCTGGAGAAGGCTGGAAAGGTCAAAGTCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGCGATGTCATTTGCCAGTTGGATGCTCTTAGTTCTGTGGGCAGGATTGAAGATTCCGTCATTGCTCCAGATGGATCTGTATATCATGAACATATATTCTGTGCAAAATGCAAGTTGCCTGAAGCATTCCCCGATAATGACATTATACTCTGCGACGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTTGACCCACCGTTGGACACTGAAAATATTCCTCCTGGAGACCAATGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACCGACTTCTCCTTGGACAGTACATGGCAGGATGTATTCAAGGAAGAAGCTACTGTACCAGATGATTGTGCCGCTTTATTAAATCCGGAAGAAGAATGGCCGTCAGATGATCCAGAAGATGATGATTATAACCCGGACAGGAGAGAAAACACTCACAACATCAATGCAGAAGGCACTGATGAAAGTCCATCTGATTCAAGCAGCTCTATCAGTCTTTCGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCCATGAGCCTTGAATATCTTTCTGTTAATAGTTGCGTTGATTCTGATGGATATGGGGAAATAGTATGCAGCCGCAGGCAGCGTAAAGCAGTTGACTACAGGAAACTTTATGATGAAATGTTTAAGGATGCTCCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGGAAGCGGAGAGAAAAGGAATCTGATGCTGCTAATACACTTATGACGCTGCACGAAAGCGATAATAAATTTCCGAATAATGAGAACAACGATACAGTGAGAGAGGGCGCGCACACACATGTAAAAAGATCTTGCTTCAGAATTCCACATCATGCAGTTGAGAAGCTTCGCCAAGTTTTCGCAGACAATGAACTTCCTCCGAGATCCGTGAAGGAACACATTTCAAAAGAGTTGGGAATTGATGCTGCAAAGGTTAGCAAGTGGTTTAAAAATGCTCGTTATTTAGCTCTTAAAACCAGGAAGCATCAAGTCGAAGGAGGAGAGCTGCCTTTGAGTTTGTTGTGCAAGACCTCGAAGGGTTCCAGTTTACAAATTGTGGACAAAGATGAGATTTTGCAGAAATCAAAGGCCTCTAAAATTGCGATGGTTCATTCACCGAATAATGGTAACGGTATTACCGATAGACAGAAAGTGAAGTCATCTTCTGGCAGTATTTGGAAAAAAAGGCAACCGGAAATATCTCCTGCTAAGACAGCAGAAAATGGCAACAAGGACTTGGAAGAAGGGAGTGATGATGTTGGCTTGAAGAAGCTGTTACAAGAAAAGAAAAGAAAGATGGAATTTGTGTTTGGAGGAGACTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTTAGCAAATTGAAGGCTAAACTAGATAGCATGAAGGTTAAATTAATTGAAGTTCAAAACCATAGAGCAAAGGGTGCAAAGGAACCATGTGTTATATATGTGCCCACAGCTCAGCTAAGGGAAAAAGGTTGA 2148 0.4153 MRDTEKKLNKRGFRKSSHSRKHTDSKLDLSPRFETSSTKGQGKKQKLKSKPHKLVVCTATSRGTATDSSSIKGSIKDASSEKLIVGQNMHYNDGKSLQMLSSTKQPGEKISFGPIVDGNDADGEVNIQKVKRRRRRKRRRDNVDLDDALRLQRRTRYLLIKMKVEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDVICQLDALSSVGRIEDSVIAPDGSVYHEHIFCAKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQCWFCKFCECKMEILEATNAHLGTDFSLDSTWQDVFKEEATVPDDCAALLNPEEEWPSDDPEDDDYNPDRRENTHNINAEGTDESPSDSSSSISLSSLNDEYSPVDKAMSLEYLSVNSCVDSDGYGEIVCSRRQRKAVDYRKLYDEMFKDAPPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESDNKFPNNENNDTVREGAHTHVKRSCFRIPHHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARYLALKTRKHQVEGGELPLSLLCKTSKGSSLQIVDKDEILQKSKASKIAMVHSPNNGNGITDRQKVKSSSGSIWKKRQPEISPAKTAENGNKDLEEGSDDVGLKKLLQEKKRKMEFVFGGDSKAAELEFERLSKLKAKLDSMKVKLIEVQNHRAKGAKEPCVIYVPTAQLREKG* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0106 715 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Amo15g0106 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Amo15g0106 715 Coils Coil 673 693 - -
Amo15g0106 715 SUPERFAMILY Homeodomain-like 491 552 IPR009057 -
Amo15g0106 715 Gene3D - 490 554 - -
Amo15g0106 715 MobiDBLite consensus disorder prediction 437 458 - -
Amo15g0106 715 SMART PHD_3 238 291 IPR001965 -
Amo15g0106 715 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 696 - -
Amo15g0106 715 Pfam Homeodomain 498 543 IPR001356 GO:0003677
Amo15g0106 715 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Amo15g0106 715 PANTHER POLYCOMB PROTEIN PCL 1 696 - -
Amo15g0106 715 CDD PHD_PRHA_like 238 290 IPR045876 -
Amo15g0106 715 Pfam PHD-finger 238 293 IPR019787 -
Amo15g0106 715 SUPERFAMILY FYVE/PHD zinc finger 230 296 IPR011011 -
Amo15g0106 715 MobiDBLite consensus disorder prediction 1 73 - -
Amo15g0106 715 MobiDBLite consensus disorder prediction 592 617 - -
Amo15g0106 715 MobiDBLite consensus disorder prediction 59 73 - -
Amo15g0106 715 MobiDBLite consensus disorder prediction 592 639 - -
Amo15g0106 715 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Amo15g0106 715 MobiDBLite consensus disorder prediction 361 380 - -
Amo15g0106 715 CDD homeodomain 491 552 IPR001356 GO:0003677
Amo15g0106 715 SMART HOX_1 490 552 IPR001356 GO:0003677
Amo15g0106 715 MobiDBLite consensus disorder prediction 332 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0106 Amo-Chr15 4019321 4024944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0106 138 552 Homeobox Transcription Factor Family AT4G29940 56.279 9.86e-148 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Amo15g0106 Homeodomain 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0106 - - gmx:100816912 882.863