Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0097 ATGGGACAAGCTCTCTTGGAGCATAACACAAAGGAAGAAAGGGAAGCAAGGCAAATAATCTTCCATATTATCACATGGGCATATGATGAAGAAGAATCTACTGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCGAAAGAGATTGAGATCATGCAAACTATGACAGAAGAAGAGTACTTGGCTACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCACGGATCGGAAGAGTTTTTTGGAAACAAAAATCTCTACCTAGGCACTTACAACATGTTGACCAGAATCTGAATTTCCACTGTCCTGCAACAGGCACCCAAGAAGATGCTGCTCGTGCTTATGACATAGCAGCCATCGAGTATTAG 447 0.4228 MGQALLEHNTKEEREARQIIFHIITWAYDEEESTARAYDLAALKYWGTSTFTNFPKEIEIMQTMTEEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFWKQKSLPRHLQHVDQNLNFHCPATGTQEDAARAYDIAAIEY* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0097 148 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 148 - -
Amo15g0097 148 Gene3D AP2/ERF domain 85 148 IPR036955 GO:0003700|GO:0006355
Amo15g0097 148 Gene3D AP2/ERF domain 8 57 IPR036955 GO:0003700|GO:0006355
Amo15g0097 148 SUPERFAMILY DNA-binding domain 27 56 IPR016177 GO:0003677
Amo15g0097 148 ProSiteProfiles AP2/ERF domain profile. 27 55 IPR001471 GO:0003700|GO:0006355
Amo15g0097 148 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 18 148 - -
Amo15g0097 148 ProSiteProfiles AP2/ERF domain profile. 86 148 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0097 Amo-Chr15 3752156 3753302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0097 12 148 AP2-EREBP Transcription Factor Family AT5G17430 54.225 3.11e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0097 - - ahf:112716370 172.94