Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0079 ATGAATGGGTCAAGAAGAAACTTGGGTTACTTTTCATGTGGAACTGGTAATCCCATTGACGACTGCTGGCGTTGTGACCCAAACTGGGAAAATAACCGTCAAAAACTCGCAGATTGCGCCATCGGGTTCGGCAAGGACGCAACCGGAGGAAGAAACGGCCAAATCTATGTAGTAACGGACTCTGGAGATGATGATCCTGTGAACCCAAAACCAGGAACACTAAGACACGCAGTTATTCAAGACGAGCCACTATGGATCATTTTCAAGAGAGACATGGTGATTAATCTGAAACAAGAGCTTGTTATGAATTCCTTCAAGACTATTGACGGAAGAGGTGCTAGTGTTCACATTGCCAATGGTGGATGCATCACCATACATCATGTGAGTAACATCATCATTCATGGTATTCACATCCATGATTGTGTGCCAACTGGGCATGGGTACATAAGAGACTCTCCAAGCCATTATGGGTGGTGGACGGTGTCGGTACGGAACGGAGTTTCCTACTTTTGGTTCGAACATGTGTGGTTGATCACTTGCTCGCTTGGTCGTAAATTCCCTATTATGGTTGTTACGTGCAGACATGGGTATTTTCACGTGGTTAATAATGCCTATACTCACTGGGAAATGTACGCTATTGGCGGGAGTGCTAACCCAACCATTATAAGCCAAGGGAACAGGTTTCTGGCACCGGATAACAGGTTCAGCAAGGAGGTGACGAAGCACGAGATTGCGGCACAGAAGGAATGGAAGAACTGGAACTGGAGATCGGAGGGGGACATGTTCTTGAATGGAGCATTCTTCCGAGAATCTGGTGAAGGTGCTCTTTATACCTATGCTAGGGCATTGAGTCTCAGTGCAAGGCCATCTTCTTTGGTTGAATCAATGACCACCACTGCTGGTGCACTCAACTGTAAGAAGGGTAACCGCTGCTGA 936 0.4658 MNGSRRNLGYFSCGTGNPIDDCWRCDPNWENNRQKLADCAIGFGKDATGGRNGQIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVINLKQELVMNSFKTIDGRGASVHIANGGCITIHHVSNIIIHGIHIHDCVPTGHGYIRDSPSHYGWWTVSVRNGVSYFWFEHVWLITCSLGRKFPIMVVTCRHGYFHVVNNAYTHWEMYAIGGSANPTIISQGNRFLAPDNRFSKEVTKHEIAAQKEWKNWNWRSEGDMFLNGAFFRESGEGALYTYARALSLSARPSSLVESMTTTAGALNCKKGNRC* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0079 311 PANTHER OS04G0137100 PROTEIN 192 308 - -
Amo15g0079 311 SMART amb_all 91 234 IPR002022 -
Amo15g0079 311 Gene3D - 190 304 IPR012334 -
Amo15g0079 311 Gene3D - 16 184 IPR012334 -
Amo15g0079 311 PANTHER PECTATE LYASE 18-RELATED 192 308 IPR045032 GO:0030570
Amo15g0079 311 PRINTS Pollen allergen Amb family signature 99 115 IPR018082 -
Amo15g0079 311 PRINTS Pollen allergen Amb family signature 63 88 IPR018082 -
Amo15g0079 311 PRINTS Pollen allergen Amb family signature 39 56 IPR018082 -
Amo15g0079 311 PRINTS Pollen allergen Amb family signature 163 184 IPR018082 -
Amo15g0079 311 SUPERFAMILY Pectin lyase-like 2 305 IPR011050 -
Amo15g0079 311 PANTHER OS04G0137100 PROTEIN 4 183 - -
Amo15g0079 311 PANTHER PECTATE LYASE 18-RELATED 4 183 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0079 Amo-Chr15 2813454 2815504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0079 4 311 Polysaccharide Lyase AT4G13710 58.564 3.91e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0079 K01728 - han:110873721 464.151