Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0078 ATGGCAGCAATGATGCAAGGAGTGCAGAAGAACACTCTATATGTGGGTGGTTTAGCTGAGGAAGTTAACGAGTCCATACTTCATGCAGCCTTCATACCCTTCGGGGACATTAAGGATGTTAAGACCCCACTTGACCAGGCAACGCAGAAGCACAGGTCGTTTGGCTTTGTTACATTTCTTGAGAGGGAGGACGCTGCTGCCGCCATGGACAACATGGATGGCGCTGAACTCTACGGCCGTGTACTCACTGTTAACTATGCCCTCCCTGAGAAAATCAAGGGTGGTGAGCAGGGCTGGGCCGCTCAACCAATTTGGGCTGATGCTGACACCTGGTTTGAGCGGCAACAACAAGAAGAAGAGATGCGTCGTCTTGAGGCAGAGAATCGAGCTGCAAATCAGGCAGCAGAAGACCTGCGCAGGAAAAAAGCTGCCGAAGAGCGGGAAGGAGAAAAAGAAGACGAAATTGATCCCATGGCAAAGGCCGAAGCAGAGGCTCTGCAACAGAATAACTAG 513 0.5127 MAAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLEAENRAANQAAEDLRRKKAAEEREGEKEDEIDPMAKAEAEALQQNN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0078 170 Coils Coil 114 148 - -
Amo15g0078 170 MobiDBLite consensus disorder prediction 116 170 - -
Amo15g0078 170 CDD RRM_PPIE 13 85 IPR034168 GO:0003723
Amo15g0078 170 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Amo15g0078 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Amo15g0078 170 PANTHER TRANSFORMER-2-RELATED 6 169 - -
Amo15g0078 170 MobiDBLite consensus disorder prediction 116 160 - -
Amo15g0078 170 SMART rrm1_1 12 85 IPR000504 GO:0003723
Amo15g0078 170 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 6 169 - -
Amo15g0078 170 Gene3D - 3 155 IPR012677 -
Amo15g0078 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0078 Amo-Chr15 2807216 2812777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0078 11 89 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.80e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0078 - - ccaj:109797476 261.151