Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0071 ATGTCTCGCTCCCTCAACAGCAGAACTTTATTCTTGATTCTAATCTCAACTATGCTCATGAAGCACGGTAATTCAATGCCAACATACAATTATCATGACTGTAAAGATCCATTATTGGAGAATGCAACCACCGGTGCCATTTTCCAATCTGATCTAACTTATCTTTTGAGGCTTTTATCTTCAGCAGCTTTCTCTAAGAGCTTCCACAAGGCTAATGTTTCCACAAGGCTGTATGGCCTCTTCCAATGCAGGGCTGATGTGTCCCAGGTCACCTGCAAAAACTGTACCATAACTGCCAGTATAGAAATCAAAAGCAAGTGCGCATCGAAATCTAGTGCAGTAATCTGGTACGACGAATGCATGCTTAGGTACTCCAAGGAACAGTTTTTTGGGGTGGCGCAAACTAAGCCATTAGTATTTGCTTGGAACATTGACGACAATAATAGCACTTCACCGACTGAAACTTATCTCAATGTACAAGCAGTGATGTACCAGTTGATAGAACAAGCCTCAAGTAGGGATATGCTGTTCAGTGTAGGGAAATATAAGGTAAATAATGGGTCCGAGGATAGATACGGGTTGGTGCAGTGTACAAGGGATATAAATCGCTCTTCATGTGCGTCTTGTTTGTCTAATTTGATGGATAGATCTAAGACTTGTTGCGAACACAGTGTTGGGTGGCGCTTACTGGCTCCTACTTGCATTATAAGGTACGAGAAGGATATCTTCTATGATAGTTTAGAGCCACTAGTATCACCTAATACTAGCAAACCGAGACTACCATCGAAAGATAACAGAAATCGCACTGCAAAACTCCTTATACTCCACATGGTCATTCCAATTACGGTTTTTATGCTCTTCTGTCTTGTCTGGTCAGCTCAACCCAAGGAAAGACGAAATCAAGGGGAACAGCTTACCGATGTAATTCAAGTAAATAAGTTGAAAGGTTCAAGTAGGTCGTACTTTAAGGATCAAGGAATGATTACACTCGAAGACAACAAAGGAGAAGTACAGTGCTTTAGTTTGAGCACGATTAAGGTTGCTACCAACAGTTTTTCTGATGACACTAAGCTAGGTGAAGGTGGCTTTGGGCCCGTTTTCAAGGGGAAGTTAAATAATGGAAAGGAAATAGCAGTTAAAAGGCTTTCATTCAAATCAAGACAAGGCATTGAAGAATTCAAGAATGAAGTGACGTTGATTGCAAAACTTCAACACAAAAATCTTGTTAGGCTCTTGGGATGCTGCCTTGATAGAAACGAAAAGCTTCTTGTCTATGAGTACATGGCCAACACCGGTCTCGATGCTTTTCTATTTGATCAAAACAAACGTGGAAAGCTGGACTGGCCTAAGCGGGAAAAAATTATAAATGGAATTGCAAGAGGTCTTTCATATCTACACGAGGATTCCAGGCTGAAAATTATTCATAGAGATTTGAAAGCTAGCAATGTATTGTTAGACCAAGACATGAATCCCAAGATATCAGATTTTGGGACTGCTAGAATATTTTATAGCGATCAAATTGAAGCAAGCACCGAAAGGGTTGTTGGTACATATGGTTATATGGCACCAGAATATGCTTTGGAAGGGTCATTTTCGGTCAAATCTGATGTTTACAGCTTTGGGGTACTGATGTTGGAAATTTTAAGCGGGAGAAAGAACATTGGTTTCTTCCAACCAGAGCGTCGTCGTGATCAAACTCTAACTCTTATATCTTATGCATGGCGACTCTGGAGCGAAGGCAAGGAGCTGGAATTTCTGGATCATGTCCTGGTCAACGCTTGCCCCATAGATGTGGCGTTGAGATGGATTCATATTGGACTGTTGTGTGTTCAAGAAAGGCCCAAAGATAGGCCCACCATGTCCTCGGTTATTTTGATGCTTGGAAGCACTACAGCCCTTCCTCTACCACTTGCACCTCCATTCTCTTTAAGCAACTATTATGATAATACAACTGACGAATTTTCAATAACGGAAGAAAAAGAGGAGGAGGTGGAAGAAGAGGAGGATGATAATTCCAATCCTTTTTCAGTAAAATTATAG 2040 0.4103 MSRSLNSRTLFLILISTMLMKHGNSMPTYNYHDCKDPLLENATTGAIFQSDLTYLLRLLSSAAFSKSFHKANVSTRLYGLFQCRADVSQVTCKNCTITASIEIKSKCASKSSAVIWYDECMLRYSKEQFFGVAQTKPLVFAWNIDDNNSTSPTETYLNVQAVMYQLIEQASSRDMLFSVGKYKVNNGSEDRYGLVQCTRDINRSSCASCLSNLMDRSKTCCEHSVGWRLLAPTCIIRYEKDIFYDSLEPLVSPNTSKPRLPSKDNRNRTAKLLILHMVIPITVFMLFCLVWSAQPKERRNQGEQLTDVIQVNKLKGSSRSYFKDQGMITLEDNKGEVQCFSLSTIKVATNSFSDDTKLGEGGFGPVFKGKLNNGKEIAVKRLSFKSRQGIEEFKNEVTLIAKLQHKNLVRLLGCCLDRNEKLLVYEYMANTGLDAFLFDQNKRGKLDWPKREKIINGIARGLSYLHEDSRLKIIHRDLKASNVLLDQDMNPKISDFGTARIFYSDQIEASTERVVGTYGYMAPEYALEGSFSVKSDVYSFGVLMLEILSGRKNIGFFQPERRRDQTLTLISYAWRLWSEGKELEFLDHVLVNACPIDVALRWIHIGLLCVQERPKDRPTMSSVILMLGSTTALPLPLAPPFSLSNYYDNTTDEFSITEEKEEEVEEEEDDNSNPFSVKL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0071 679 CDD STKc_IRAK 358 627 - -
Amo15g0071 679 SMART serkin_6 352 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g0071 679 PANTHER PROTEIN KINASE DOMAIN 20 654 - -
Amo15g0071 679 Gene3D Transferase(Phosphotransferase) domain 1 428 633 - -
Amo15g0071 679 ProSiteProfiles Protein kinase domain profile. 352 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo15g0071 679 ProSiteProfiles Gnk2-homologous domain profile. 30 129 IPR002902 -
Amo15g0071 679 Pfam Protein tyrosine and serine/threonine kinase 356 625 IPR001245 GO:0004672|GO:0006468
Amo15g0071 679 ProSiteProfiles Gnk2-homologous domain profile. 135 243 IPR002902 -
Amo15g0071 679 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 654 - -
Amo15g0071 679 MobiDBLite consensus disorder prediction 655 670 - -
Amo15g0071 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Amo15g0071 679 SUPERFAMILY Protein kinase-like (PK-like) 336 649 IPR011009 -
Amo15g0071 679 Coils Coil 647 667 - -
Amo15g0071 679 Gene3D Phosphorylase Kinase; domain 1 327 427 - -
Amo15g0071 679 Pfam Salt stress response/antifungal 150 240 IPR002902 -
Amo15g0071 679 Pfam Salt stress response/antifungal 40 126 IPR002902 -
Amo15g0071 679 MobiDBLite consensus disorder prediction 655 679 - -
Amo15g0071 679 Gene3D - 28 129 IPR038408 -
Amo15g0071 679 Gene3D - 138 243 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0071 Amo-Chr15 2410168 2413156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0071 6 649 Receptor kinase-like Gene Family AT4G05200 42.814 9.80e-168 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo15g0071 PK_Tyr_Ser-Thr 9.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0071 - - adu:107488599 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0071 15 2410168 2413156 Amo15g0071 15 2410168 2413156 ECH
Amo05g2094 05 45857600 45866348 Amo15g0071 15 2410168 2413156 hybridization