LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo15g0070	ATGCTCTATCAGTCTAACTTACTTTTTGGTCTTTTGGCTGAAAAGGTGATCATGGACAAGGACAAGGACACACCTTTAGTTATGTATATGTTTGTCATTTGTATGTTATTGTTATGTGTTGGAAGCAGCACAGACCCTCTTGACACATATTGTCCAACTGAATTCCCATTATATAGCAGCAACAGCACATTTGACAATAACCTGAAGCTTCTTTTGGGGTTGCTGCCCTCCAACACGGCTTCCAAGAATGGCTTCTACAACACATCCGTGGGAGATGGGGAAGACAAGGTGTACGGACAAGCACTGTGCAGAGGAGACATCACCAACTCCACAGTCTGCAAGGAATGCATTCAGAAAGCAAGCCAAGATTTAACAAAGATGTGCAACAGTGAAGATGCAATCATATGGTATGAGCTTTGCCAAGTCCGCTACTCCTTTCAGATGTTCTTCACGAGTATGACTTACACCGGGAAGTATCCTAACCATAATCTTAAGGAGAAGAATATCTCGCACCCTTCTGGATTTGATCAAGTCTTGGCATATCTGATGAACAACCTCTCACAAGAAGCAGCTTTTATTCCTGCCAACAACATGTTTGCAGCAGGGGAGATTCAATATTCTGGTTCTGATGGTATCAAGAACAAGAAGCTTTATGGACTAGTCCAGTGTACCAGGGATACCTCTCAAGCAGACTGTGCCACTTGCTTGAGTTCTGCCTTAACAGAACTTACTCAATGCTGCTCCTTCCGAGAAGGCGGTATCATTCTTAGTCGGACTTGCAATGTGAGGTTTGAATCATACAGGTTCTTCAACCATTCATCAGCAAAGATGCTGCTCTTTCCGACTTCCAAAGGAGGGGAAAAATGGAAGCCATGGATGTTTGCATTGACAATTGGTGGTTCACTCTTAGTATTAGCAGTTACTATTTTGCTGTGCACTGCTTGCCTGCTCCGCAAAGGGGACACAGGGAGAGATGAAGAAAGGATCGAAAGGACGCTACTACAACAGTTGGCAAGCTCCAAGAGCGTAGCAGTTACACAGGAAGGTGACCTGATTAGCTCTGATGAACTGTCGTTCATGAACTTAGCAACCATTAAGGATGCCACTGATGACTTCTCTGATACAAATAAACTGGGACAAGGAGGATTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGCAGTGAAGTTGCAGTTAAAAGGCTATCAAAAAAGTCTTGGCAAGGGATAGAGGAATTGAAAAATGAGGTCATACTCATTGCCAAGCTTCAGCATAAGAATCTAGTGAGGCTGTTGGGGTGTGGCTTAGAGGGGGATGAAAAATTTCTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGTTGACTTGTGCTGTTGCTTAATATATTTTCAAGATCCAGAGAAACGTTCCGAGTTTGATTGGCATACTTGGTATGGGATTATCAATGGCATTGCGAGAGGACTGCTTTATCTTCACGAGGAGTCTCGGCTTAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGACCATGAAATGGTTGCCAAAATATCAGATTTTGGTATGGCTAGGATATTTTTCGAGAATCAAAATACAGCAAACACAAAGAGAGTTGTGGGAACATATGGATATATGGCTCCCGAATATGCAATGGAAGGACTCTTCTCAGTAAAATCGGATGTGTTCAGCTTTGGTGTCATGTTGCTTGAAATAATCAACGGGAAAAGAAACAGTGGGTTCTACACAACAGAACTTGCCCCAACACTACTGGCATATGCATGGCAGCTGTGGAATGAAGAGAGGAAGTTGGAATTTGTGGATCCAGTGTTGTTGGAATCGTGTGTGGCCTGTGAAGTTGTGAAGTGCATGCACATTGGGCTTCTGTGTGTGCAGGAAGATCCGGAGCTGAGGCCTAACATGTCAAGCGTGGTGGTTCTCCTAGGAAGTGAACAAATGGCTCTTCCAAAACCAAGTCAACCAGCATTTTCATTGGGTAGGGCGTTTCATGTTGATCAAGATCCAGGTCCAGCCACTACAACCAATCCTTCTATGAACGGGGGGAGTATATTGTCCAGTGTCTTACCTAGATGA	2112	0.4332	MLYQSNLLFGLLAEKVIMDKDKDTPLVMYMFVICMLLLCVGSSTDPLDTYCPTEFPLYSSNSTFDNNLKLLLGLLPSNTASKNGFYNTSVGDGEDKVYGQALCRGDITNSTVCKECIQKASQDLTKMCNSEDAIIWYELCQVRYSFQMFFTSMTYTGKYPNHNLKEKNISHPSGFDQVLAYLMNNLSQEAAFIPANNMFAAGEIQYSGSDGIKNKKLYGLVQCTRDTSQADCATCLSSALTELTQCCSFREGGIILSRTCNVRFESYRFFNHSSAKMLLFPTSKGGEKWKPWMFALTIGGSLLVLAVTILLCTACLLRKGDTGRDEERIERTLLQQLASSKSVAVTQEGDLISSDELSFMNLATIKDATDDFSDTNKLGQGGFGAVYKGVLPDGSEVAVKRLSKKSWQGIEELKNEVILIAKLQHKNLVRLLGCGLEGDEKFLIYEFMSNKSLDQFIFVDLCCCLIYFQDPEKRSEFDWHTWYGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHEMVAKISDFGMARIFFENQNTANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVMLLEIINGKRNSGFYTTELAPTLLAYAWQLWNEERKLEFVDPVLLESCVACEVVKCMHIGLLCVQEDPELRPNMSSVVVLLGSEQMALPKPSQPAFSLGRAFHVDQDPGPATTTNPSMNGGSILSSVLPR*	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo15g0070	703	ProSitePatterns	Protein kinases ATP-binding region signature.	378	400	IPR017441	GO:0005524
	Amo15g0070	703	Pfam	Salt stress response/antifungal	167	267	IPR002902	-
	Amo15g0070	703	Pfam	Salt stress response/antifungal	57	146	IPR002902	-
	Amo15g0070	703	CDD	STKc_IRAK	378	651	-	-
	Amo15g0070	703	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	29	683	-	-
	Amo15g0070	703	Gene3D	-	157	269	IPR038408	-
	Amo15g0070	703	Gene3D	-	46	149	IPR038408	-
	Amo15g0070	703	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	29	683	-	-
	Amo15g0070	703	MobiDBLite	consensus disorder prediction	681	703	-	-
	Amo15g0070	703	ProSiteProfiles	Gnk2-homologous domain profile.	157	269	IPR002902	-
	Amo15g0070	703	Gene3D	Phosphorylase Kinase; domain 1	333	447	-	-
	Amo15g0070	703	SMART	serkin_6	372	654	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo15g0070	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	504	516	IPR008271	GO:0004672\|GO:0006468
	Amo15g0070	703	MobiDBLite	consensus disorder prediction	679	703	-	-
	Amo15g0070	703	SUPERFAMILY	Protein kinase-like (PK-like)	354	653	IPR011009	-
	Amo15g0070	703	ProSiteProfiles	Protein kinase domain profile.	372	669	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo15g0070	703	Gene3D	Transferase(Phosphotransferase) domain 1	448	663	-	-
	Amo15g0070	703	Pfam	Protein tyrosine and serine/threonine kinase	375	652	IPR001245	GO:0004672\|GO:0006468
	Amo15g0070	703	ProSiteProfiles	Gnk2-homologous domain profile.	45	149	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo15g0070	Amo-Chr15	2407113	2409866	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo15g0070	51	671	Receptor kinase-like Gene Family	AT4G23230	40.781	3.61e-158	469

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Amo15g0070		PK_Tyr_Ser-Thr	3.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo15g0070	-		-	adu:107488598	1358.2