Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0048 TGGAATGATGAGGCCGAAGACATATGCGGGTCTCAGTTTGATTGCAACTCTAGCTATCACATATCATGCATTTATGATTTAACAGTAGAGACCATGCTTCTTCTCAACATGGGTTTGGTCATTATGTGTATTCTATGGCAGTTAACGAAGAAGGTTTTCCTGGGTTCTCCTCGGGAAGCCGAGGTAGAAAGGCTTAACGAGCAATCATGGAGGGAGATTATGGAAATCCTCTTCGCCATTACTATTTTTAGGCAGGATTTCTCTTTTACATTCCTTGCGATGGTCACAGCATTGCTGTTGATTAAAGCTTTGCATTGGTTGGCTCAAAAGAGGGTTGAGTACATTGAGACCACTCCTTCTGTGCGGCTGTGTCCGTGTTATTCCACATTCGAATTCGTATCCTTATACAGTTCTCTGAAGCATCTGTTTCAAACATGGCAACCGTCTGTTTCAATATTCTTTTCTTTTGAGTACATGATACTTGCAACTACAACAGTGTCAGTTTTTGTAAAATATCTTTTCTATATCAGTAACATGCTCATGGAAGGACAATGGGAAAGGAAACCAATCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTATGTATCTTTTCTTCTTCCTTGTAATTTTTATAAACTACGGTGTTCCTCTGCACTTAATACGGGTGCTTTACGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATCCGATATTGTAAGATCACTTCAAATATGAAGGACCGTTTTCCAGAGGCAACCCCTGAAGAGCATAATGCAAGTGATGCAKCCTGCATTATCTGTCGTGAAGAGATGACTYRTGCCAAGAAACTTATATGTGGACATCTGTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCRCTACCTGCAGAGCCCTGGTTGTTCCACCCGAAAATGGGGCAACTGCAACTGGAGGCCAGCAAGGAGCACAATCAGATGCTCATCGACAGGGAACAGGGACTAGCACTGGAAGCTCAGCTCAAAATGAGGTTGGCGGTGGTGGGGCAARTGATAATTTGAGTCGCCATCAAGCCAGACMTCAAGCTGCTGCTGCTGCTGTTTCAATATACGAGAATTCTTATGTTTACCCCTCCACATCATCTTTATTGTGCGCTCTTACTCAGGCGACTTCTCAATCTCACAACTCTCCTGGGTACGCTCTTCAACCTCCAGTTCAAATGTCTTTGGGTGAATCCATTAACACGGGGATTAACGGAGAACAAGCTTCCAGTGAACAGGCACAAAAGCCGTTTGTTTTCCACGGTGGACTAATTGTATCCTTTCCTCAGATGGGGCACTTCCATTTGTTTCCTTCCCAAACACATCCAGATATGCCAAGTTCGCACCTGGAAGCTCAAAGAAAACTTCTTCAGTACCAGATTGAGCTCCAGCTTTTTTGCAGAGACAAAAGGTTGAAAATAGTG 1479 0.4327 WNDEAEDICGSQFDCNSSYHISCIYDLTVETMLLLNMGLVIMCILWQLTKKVFLGSPREAEVERLNEQSWREIMEILFAITIFRQDFSFTFLAMVTALLLIKALHWLAQKRVEYIETTPSVRLCPCYSTFEFVSLYSSLKHLFQTWQPSVSIFFSFEYMILATTTVSVFVKYLFYISNMLMEGQWERKPIFTFYLELIRDLLHLSMYLFFFLVIFINYGVPLHLIRVLYETFRNFKVRVADYIRYCKITSNMKDRFPEATPEEHNASDAXCIICREEMTXAKKLICGHLFHVHCLRSWLERQHTCXTCRALVVPPENGATATGGQQGAQSDAHRQGTGTSTGSSAQNEVGGGGAXDNLSRHQARXQAAAAAVSIYENSYVYPSTSSLLCALTQATSQSHNSPGYALQPPVQMSLGESINTGINGEQASSEQAQKPFVFHGGLIVSFPQMGHFHLFPSQTHPDMPSSHLEAQRKLLQYQIELQLFCRDKRLKIV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0048 493 SUPERFAMILY RING/U-box 251 315 - -
Amo15g0048 493 MobiDBLite consensus disorder prediction 319 350 - -
Amo15g0048 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 316 IPR013083 -
Amo15g0048 493 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 31 409 - -
Amo15g0048 493 MobiDBLite consensus disorder prediction 319 361 - -
Amo15g0048 493 CDD RING-H2_synoviolin 268 309 - -
Amo15g0048 493 Pfam Ring finger domain 270 309 IPR001841 -
Amo15g0048 493 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Amo15g0048 493 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE HRD1B-LIKE 31 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0048 Amo-Chr15 1904105 1907441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0048 13 481 C3H Transcription Factor Family AT3G16090 55.852 4.51e-176 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0048 K10601 - gmx:100816441 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0048 15 1904105 1907441 Amo15g0048 15 1904105 1907441 ECH
Amo05g2280 05 48589079 48592430 Amo15g0048 15 1904105 1907441 hybridization