Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0004 ATGATGAGTGAACGGGGTTCTTCATGCACAAGACCTGGCGGGAGATCTTCATTCGTCGTGCCAAGAGCTTCTGTGGAGCTCTTTGAGGCAAACATATTAGCTTTATTGTCTGAAATTTTGTTAGCAGTTTTCACCGAAGTTATGCAGGGCAATCCAGAATTTACACATCATTTGATACATAAGCTGAAGTACCATCCTGGCCAAATTGAAGCTGCTGCTATCATGGAGCACATCTTAGAAGTCATCAGGTATTCGACTAAATCAATTGAGAGGGAAATAAACTCTGTCAACGACAATCCTCTGATTGATGTCACTAGTAGCAAGGCTTTGAATGGTGGCAATTTTCAAGGCACCCCAATAGGAGTTTTGATGGATAATGCACGTTTAGCTGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACCGAGCTAGTCAATGACTTGTATAACAACGGTTTGCCATCGAATCTCTCTGTCAGCAAAAATCCGAGTCTGGATTATGGTTTTAAGGCATCTGAGGTTGCCATGGCTGCTTATTGCTCTAAACTTCAATATCTGGCAAACTCAGTAACCAACCACGTGCAAAGTGCTGAGCAACATAACCAATATAGCACAATCAAGGATATTATAAGTGGAGTTGCAAAGAAGACATTAAGCACAAATTTGTTTGGATCATGTGAGAGAGATTTGCTCAAAGTAGTTGATAGAGAATATGTATTCTCCTATATTGATGATCCCTTCAATGTTAGGTATCCATTGATGCCAAAATTAAAACAAATACTTTATGAGAAAGCACAAGCGAGTGCCATCGGCGGGAAAAAAAATGCGAGCGTAGTTTTTGAGGAAATTGGAGCTTTTGAGAATGAGTTGAAGAGTATGTTACCAAATGATGTTGAAAGTGCAAGAGTATAA 915 0.3978 MMSERGSSCTRPGGRSSFVVPRASVELFEANILALLSEILLAVFTEVMQGNPEFTHHLIHKLKYHPGQIEAAAIMEHILEVIRYSTKSIEREINSVNDNPLIDVTSSKALNGGNFQGTPIGVLMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSVSKNPSLDYGFKASEVAMAAYCSKLQYLANSVTNHVQSAEQHNQYSTIKDIISGVAKKTLSTNLFGSCERDLLKVVDREYVFSYIDDPFNVRYPLMPKLKQILYEKAQASAIGGKKNASVVFEEIGAFENELKSMLPNDVESARV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0004 304 PANTHER HISTIDINE AMMONIA-LYASE 79 203 IPR001106 -
Amo15g0004 304 PANTHER HISTIDINE AMMONIA-LYASE 205 304 IPR001106 -
Amo15g0004 304 PANTHER HISTIDINE AMMONIA-LYASE 23 80 IPR001106 -
Amo15g0004 304 Gene3D - 203 304 IPR023144 -
Amo15g0004 304 Gene3D Fumarase/aspartase (Central domain) 80 202 - -
Amo15g0004 304 Gene3D Fumarase/aspartase (Central domain) 23 79 - -
Amo15g0004 304 Pfam Aromatic amino acid lyase 79 203 IPR001106 -
Amo15g0004 304 Pfam Aromatic amino acid lyase 23 80 IPR001106 -
Amo15g0004 304 PANTHER PHENYLALANINE AMMONIA-LYASE 79 203 - -
Amo15g0004 304 PANTHER PHENYLALANINE AMMONIA-LYASE 205 304 - -
Amo15g0004 304 PANTHER PHENYLALANINE AMMONIA-LYASE 23 80 - -
Amo15g0004 304 SUPERFAMILY L-aspartase-like 21 303 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0004 Amo-Chr15 68955 70115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0004 23 303 Monolignol Biosynthesis Gene Families AT3G53260 51.622 1.16e-123 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0004 K10775 - gmx:100787872 418.313