Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g4197 ATGGGAAGACCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGATATCATTTTGGTCTCTTATATCCAAGAACATGGTCCTGGCAATTGGAGGGCTGTTCCTACCAACACAGGGTTATCAAGATGTAGCAAGAGTTGTAGACTTAGATGGACTAATTACTTGAGGCCTGGAATCAAAAGGGGTAACTTCACTGAACAAGAAGAAAAGATGATTATCCATCTTCAAGATCTCTTAGGAAACAGATGGGCTGCAATTGCTTCATACCTACCACAAAGGACGGATAATGATATAAAGAATTATTGGAACACGCATCTGAAGAAGAAGCTCAAGAAGTTGCAAGCTCCTAGTTCTGGAGTTTGCAACTTCGGCGGAACCGGAACTGGAACCGGAATTGAAACCGGAACGAATTATTCCGGTTCGATTCCGGTTCGAGGCCAATGGGAGCGAAGGCTCCAAACCGATATCCACATGGCGAAAAGAGCCCTCAGTGAAGCCCTTTCACCGGAGAACAATAATAATAATAGTAATAATAATAATTTTTGTTCTTCATCTTCAACAAAAGCGATTACACAATCATCATCTTTGTGCTATGCTTCAAGTGCTGAGAACATAGCACGTTTGTTGAAGGGTTGGATGAAGAATCCAGGAACAAATAACAAGTGTTCAAGAACAAACTCTTCATCTTTGACTACTCAAAACAACAATTTCTTTGTTGTTAATGGTGGTGACACAGCTTCAAAGGGATCAGGAGGAAGTAGTAGCAATGATAACAGTGTTGAGTTGTCTGAAACCTTTGAATCCTTGTTTGGTTTGGAGTCTTTGGATTACTCATCAAACGCTACTACTACAACAACTACAACTACCACAACTACTTCAGATCATGATCATGATCATGATCAGTTTTCTCATCAATCTTTGTCTCCTAATGATGAGAACAATGTTTTTCAAGAAAATGAAAGCAAGCCTGAGATTATTGAAGATGTGATGCCATTCTCTTTGCTTGAGAAGTGGCTTCTTGAAGAGGTTGCTTGCCAAGATCAGAAAGTTATTACTGCCGATGCCAAGTTCTTCTAG 1095 0.4027 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQAPSSGVCNFGGTGTGTGIETGTNYSGSIPVRGQWERRLQTDIHMAKRALSEALSPENNNNNSNNNNFCSSSSTKAITQSSSLCYASSAENIARLLKGWMKNPGTNNKCSRTNSSSLTTQNNNFFVVNGGDTASKGSGGSSSNDNSVELSETFESLFGLESLDYSSNATTTTTTTTTTTSDHDHDHDQFSHQSLSPNDENNVFQENESKPEIIEDVMPFSLLEKWLLEEVACQDQKVITADAKFF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g4197 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo14g4197 364 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo14g4197 364 CDD SANT 16 61 IPR001005 -
Amo14g4197 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo14g4197 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 357 - -
Amo14g4197 364 Gene3D - 68 125 - -
Amo14g4197 364 MobiDBLite consensus disorder prediction 247 266 - -
Amo14g4197 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo14g4197 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo14g4197 364 MobiDBLite consensus disorder prediction 286 321 - -
Amo14g4197 364 SMART sant 66 114 IPR001005 -
Amo14g4197 364 SMART sant 13 63 IPR001005 -
Amo14g4197 364 CDD SANT 69 111 IPR001005 -
Amo14g4197 364 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 357 - -
Amo14g4197 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo14g4197 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo14g4197 364 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g4197 Amo-Chr14 147735468 147737442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g4197 1 348 MYB Transcription Factor Family AT5G62470 46.982 5.61e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo14g4197 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g4197 K09422 - gmx:778080 392.889