Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g4155 ATGGCTATCCCGATAAATATAAGTGCAACAGAGCTTTCCACACAAAGTTCCAAACTTGTTTTCCCCAAAAAGAAGCAAAGCACACAAAAACTAACCTCTCTCTCTCTCAGCCCTGCGGTGGTTACCGGTGCTCCGAGAAGCTCACCGGAAATATACTGCAACATGAAGATTAACGTGAAGACCCTTAAAGGAACTCACTTTGAAATCCAAGTGCAACCCCAAGACACGGTTGCTGATGTGAAGAGAAATATAGAGAGAGAACAAGGTGCTGAAGTTTATCCAGCTGCACAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATTATGCTATCCAAGAGCAAGGTATCATCAGGTGAAGCCTCAACTGCATCATCTGCATCCGCAAAACAGGCAGCTGAACCGGCGAGTTCTTTGCCTCCCACTTCATTGCCATCCTCAACATCTCAACCTCCTGCTTCAACTGTAGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTGCCAGTGATGTGGCCGGCATTTATGGCCAAGCAGCATCAAACCTCATTTCAGGAAGCAATTTAGAATCGACTATTCAACAGATTCTAGACATGGGGGGAGGTAGTTGGGATCGAGATACTGTTATCCGTGCTCTTCGTGCAGCATTTAACAATCCTGAAAGAGCTGTTGAGTATCTCTATTCGGGCATTCCTGAACAAGCTGAAGTACCAGCAGTTGCCAGAACCCCCGCTATTGGGCAGGCAGCAAACCCTTCAGGTGAGGCTCAGGGTCAAGCTCAGGTTGCACCTTCTGGTGGGCCCAACACCAACCCACTCAACCTCTTTCCCCAGGGTATTCCTGATATGGGTGCAAATGAAAATGCGGGCGACTTGGATTTCCTGCGGAACAGTCAACAGTTCCAAGCCCTGAGAGCGATGGTGCAAGCAAATCCCCAGATTTTGCAGCCCATGCTTCAGGAATTGGGTAGACAAAATCCACACCTAATGCAGCTCATCCAAGAGCATCAGGCTGATTTCTTACGCTTGATAAATGAACCTGATGGAGAAGAGAATCTACCAAGTGAGTTGGCTTCTGCAGTGCCCCAGACCATCACTGTCACCCCAGAAGAGAATGAGGCTATTCAAAGGCTTCAAGATATGGGATTTGATAGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAACAAAAACGAGGACCTGGCAGCCAACTATCTTTTGGATCACCAGAATGAATTTGAAGACTAA 1308 0.4656 MAIPINISATELSTQSSKLVFPKKKQSTQKLTSLSLSPAVVTGAPRSSPEIYCNMKINVKTLKGTHFEIQVQPQDTVADVKRNIEREQGAEVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKSKVSSGEASTASSASAKQAAEPASSLPPTSLPSSTSQPPASTVGQGVSNSEQNPVTTPASDVAGIYGQAASNLISGSNLESTIQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEVPAVARTPAIGQAANPSGEAQGQAQVAPSGGPNTNPLNLFPQGIPDMGANENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGRQNPHLMQLIQEHQADFLRLINEPDGEENLPSELASAVPQTITVTPEENEAIQRLQDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFED* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g4155 435 CDD UBA1_Rad23_plant 203 252 - -
Amo14g4155 435 SUPERFAMILY XPC-binding domain 309 371 IPR036353 GO:0003684|GO:0006289|GO:0043161
Amo14g4155 435 Gene3D - 383 431 - -
Amo14g4155 435 SUPERFAMILY Ubiquitin-like 55 135 IPR029071 -
Amo14g4155 435 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 207 250 IPR015940 -
Amo14g4155 435 CDD Ubl_Rad23 55 128 - -
Amo14g4155 435 SMART ubq_7 55 129 IPR000626 GO:0005515
Amo14g4155 435 PANTHER UV EXCISION REPAIR PROTEIN RAD23 55 434 - -
Amo14g4155 435 MobiDBLite consensus disorder prediction 270 292 - -
Amo14g4155 435 SUPERFAMILY UBA-like 373 432 IPR009060 GO:0005515
Amo14g4155 435 Gene3D - 202 252 - -
Amo14g4155 435 Gene3D - 303 368 IPR036353 GO:0003684|GO:0006289|GO:0043161
Amo14g4155 435 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 55 434 - -
Amo14g4155 435 ProSiteProfiles Ubiquitin domain profile. 55 130 IPR000626 GO:0005515
Amo14g4155 435 Pfam UBA/TS-N domain 390 426 IPR015940 -
Amo14g4155 435 Pfam UBA/TS-N domain 209 247 IPR015940 -
Amo14g4155 435 SUPERFAMILY UBA-like 205 260 IPR009060 GO:0005515
Amo14g4155 435 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 389 429 IPR015940 -
Amo14g4155 435 MobiDBLite consensus disorder prediction 268 292 - -
Amo14g4155 435 SMART uba_6 209 249 IPR015940 -
Amo14g4155 435 SMART uba_6 391 428 IPR015940 -
Amo14g4155 435 MobiDBLite consensus disorder prediction 143 189 - -
Amo14g4155 435 SMART CBM 310 353 IPR006636 -
Amo14g4155 435 PRINTS DNA repair protein Rad23 signature 385 401 IPR004806 GO:0006289
Amo14g4155 435 PRINTS DNA repair protein Rad23 signature 417 432 IPR004806 GO:0006289
Amo14g4155 435 PRINTS DNA repair protein Rad23 signature 402 416 IPR004806 GO:0006289
Amo14g4155 435 PRINTS DNA repair protein Rad23 signature 338 360 IPR004806 GO:0006289
Amo14g4155 435 Pfam Ubiquitin family 57 130 IPR000626 GO:0005515
Amo14g4155 435 Pfam XPC-binding domain 312 367 IPR015360 GO:0003684|GO:0006289|GO:0043161
Amo14g4155 435 TIGRFAM rad23: UV excision repair protein Rad23 55 434 IPR004806 GO:0006289
Amo14g4155 435 MobiDBLite consensus disorder prediction 143 190 - -
Amo14g4155 435 Gene3D - 51 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g4155 Amo-Chr14 147292492 147296636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g4155 55 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 2.75e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g4155 K10839 - cit:102614644 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g4155 14 147292492 147296636 Amo14g4155 14 147292492 147296636 ECH