Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g4094 ATGGATCCACAACTCACACCCCAAACCCTAAACTCCACCAGTTTATTCCTTGCCGCCACAACAGCCACCACTCATTCCGAACAACCACCACATTCACTCTCCCTCACCACCGTTCCTTCCACCGTACCACGCTCCAAGCTCATCCCGAACACTCGCTTCCTCGTCGACGCCTTCCGCCACGCCGACACAGCATTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACCGGTCTCTCCCATTCTTGGTCCCGCGGCATTGTCTTCTGCTCCGCCACCACCGCCTCCCTCCTCCAACGAATCCTCGGAGTCCCCAAACGCTTCCTTGTACCCCTTCCCCTTTGCCAGCCCGTTGAAATCGACGGCGCGGAGGTCACGCTGGTCGACGCGAACCACTGCCCTGGCGCGGTCCAGTTCCTATTCAAGGTCCCAACAAAAGAAGAAGGGAAGAAATTCGAGAGGTATGTTCACACTGGCGATTTCAGGTTTTGTAATTCAATGATTTTGGAGCCTGCAATTCTTGATTTCGTTGGCTGTGATGCTGTGTTCTTGGATACTACTTATTGCAACCCAAAGTTTGTGTTTCCTTCGCAAGAGGAGAGTGTTGATTATGTGGTTAGTGTAGTCGAGAGGGTTATTAGTGATTGTGGTGGTGATGGTAGTGGTGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAAAAGATTTTGGTTGAACTTGCACGGAGAGTGAAGAGGAAGGTGCATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGTGCTTGGGTATGGAGAGAGTGGTGTGTTTACCGAGGACAGTTCAGAGAGTAATATTCATGTTGTTGGCTGGAATGTATTGGGGGAGACATGGCCGTATTTTAAGCCAAATTTCGTTAGGATGAAGGAGATTATGATTGAGAGAGGGTACTCCAAGGTTGTGGGATTTGTGCCAACCGGATGGACTTATGAAGTAAAGGGCAATACGTTCGCAGTGAGGTCCAAGGATTCATTTGAGATTCATCTCGTGCCGTATAGCGAGCATTCCAACTACGAGGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAGGGGTGTTGTTCCGACAGTGGGTTTGGATGTTGAGAAAAGCGACAGTAAGCATGCTGAAAAAATGAGGAAGTATTTTGCTGGATTGGTTGATGAGACGGCCAACAAGCATGAATTTCTAAAGGGATTTCACCGTGCCACAGGCGACACAGATTTCTTGGTTGAGAAGGATGTTAATGATGGTCAGAAGCCAGGAAAAAACATGGAGGAAGGAATCAAGCCATCTGAGTTGGATGGTGAGGAAAGTACAACTCCGTATGTTGCTGCTAGTGTGCCCTCTTCTACTGGGGAACCGTGTACAGAAAGTGTTACTTTACTAACTGATGAAGAAAAAGAGAAAATGATTGAAGAACTTGGTAATTGTTTGCCGGCATGGGTCACTCGAAGCCAAATGTTAGAGCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGCTTCTAATTTTTATGAACGTGAAACTGAATTTCACAAGCAAGCATTTTCTTGTCAAACTTCTTCGGTGTCCAAGTGCAGCTCACTAAATGACATAGATTCTCCTTCAAAAGCTTGCCTGAATTCGAGCAGCACTACCAAAAATAACGATGTTTTTCCAAGCCAGGACTCTACTAAACTAACTATCTTGAAGCATACAGTTTTAAGTCAAGCTTCCTCTGCCAAAAGGAATAAAATTAGTGGAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAGTCACAGTCACAATCAAGTGATCCAAAGCAGTCCACCATAACAAAATTCTTCAGCAAAGTATTGCCTGTGAAGCCTAGTGTTGCTCAGTCTGATCGTTCTGAATTGATGATTGGCGTAAGCCCTAAAGTTGAAAATATGTTGCCAGATGATGTTGGAAATCGGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGAAAGAGTCATTAAAAGATCATGCCATAACTATAATTGAGAAGGCAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGAAATCTTGGTGAAAAGGAAATTTCAGTTCAAGCAGAGTGTAAAATTGATAGCTCTTTAGAGAAGAATTGTGTGTTACATGAATTGAAAGGCATTCCTGATACCACCGTGAAGAGAATTCATGTAACTCTACCACTTGAGAAATACAATCCTAAAGAGCATGCTTGTTGGAAAGATGGGCAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCCTTCTGGAGGATGAGAAAGGAAAGATTAAGGCTACTTCAATGTTATGCAATACATTCCGAAGTTTGCTGGCCCTGTCTCCAGCAGATGTGCTGCCTGCTGTGTACCTATGTACAAACAAAATTGCAGCAGACCATGAAAAGATGGAACTAAACATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGCGGAACAAATCGATCCAAAATAAGGGAGATGTATAACAAATTTGGCGATCTTGGTTGGATGATTGTTTCTCAATAG 2595 0.4405 MDPQLTPQTLNSTSLFLAATTATTHSEQPPHSLSLTTVPSTVPRSKLIPNTRFLVDAFRHADTAFSVSYFLSHFHSDHYTGLSHSWSRGIVFCSATTASLLQRILGVPKRFLVPLPLCQPVEIDGAEVTLVDANHCPGAVQFLFKVPTKEEGKKFERYVHTGDFRFCNSMILEPAILDFVGCDAVFLDTTYCNPKFVFPSQEESVDYVVSVVERVISDCGGDGSGVLFLVATYVIGKEKILVELARRVKRKVHVDARKMEVLRVLGYGESGVFTEDSSESNIHVVGWNVLGETWPYFKPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKGNTFAVRSKDSFEIHLVPYSEHSNYEELREYVKFLKPRGVVPTVGLDVEKSDSKHAEKMRKYFAGLVDETANKHEFLKGFHRATGDTDFLVEKDVNDGQKPGKNMEEGIKPSELDGEESTTPYVAASVPSSTGEPCTESVTLLTDEEKEKMIEELGNCLPAWVTRSQMLELISISGSNVVEAASNFYERETEFHKQAFSCQTSSVSKCSSLNDIDSPSKACLNSSSTTKNNDVFPSQDSTKLTILKHTVLSQASSAKRNKISGSKPNKKVKVKAKSQSQSSDPKQSTITKFFSKVLPVKPSVAQSDRSELMIGVSPKVENMLPDDVGNRYKDEIDQFMQIINGKESLKDHAITIIEKAKGDVNKALDIYYCNSGNLGEKEISVQAECKIDSSLEKNCVLHELKGIPDTTVKRIHVTLPLEKYNPKEHACWKDGQPAPYLHLARTFSLLEDEKGKIKATSMLCNTFRSLLALSPADVLPAVYLCTNKIAADHEKMELNIGGSIVTAALEEACGTNRSKIREMYNKFGDLGWMIVSQ* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g4094 864 MobiDBLite consensus disorder prediction 583 614 - -
Amo14g4094 864 CDD SNM1A-1C-like_MBL-fold 30 194 - -
Amo14g4094 864 PANTHER DNA LIGASE 7 713 - -
Amo14g4094 864 MobiDBLite consensus disorder prediction 425 443 - -
Amo14g4094 864 Pfam DNA ligase N terminus 766 858 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g4094 864 Pfam DNA repair metallo-beta-lactamase 271 374 IPR011084 -
Amo14g4094 864 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 747 859 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g4094 864 Gene3D - 48 373 IPR036866 -
Amo14g4094 864 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 7 713 - -
Amo14g4094 864 MobiDBLite consensus disorder prediction 425 466 - -
Amo14g4094 864 Gene3D - 197 351 - -
Amo14g4094 864 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 374 IPR036866 -
Amo14g4094 864 Gene3D - 745 862 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g4094 864 MobiDBLite consensus disorder prediction 452 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g4094 Amo-Chr14 146770029 146773261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g4094 751 860 Core DNA Replication Machinery Family AT1G08130 37.273 1.86e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g4094 - - aip:107635689 1665.97